Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq65 107 4e-18
seq197 104 5e-17
>seq65
Length=1244346
Score = 107 bits (118), Expect = 4e-18
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905
|||| || || || || |||||||| || || || | ||| ||||| | ||||||||||
Sbjct 631695 CCTCATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCTTTT 631636
Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965
||||||| || || ||||| ||||| | ||| ||||| || ||||| || ||| ||||
Sbjct 631635 TAAGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGAATG 631576
Query 49966 CTATTATTCTTGCTCCAAA 49984
||| ||||||| | || ||
Sbjct 631575 CTACTATTCTTTCACCGAA 631557
Score = 95.1 bits (104), Expect = 2e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 50111 TAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCT 50170
||| || |||||||||||||||||| ||||| || ||||| ||| || || |||
Sbjct 630971 TAATGAGTACATTTCAGAATGTACATTCTCCATGGCGATTTGGAATCCGTAGAAGCATCT 630912
Query 50171 TGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACC 50230
||||| | || ||||| |||| | ||| || | |||||| ||||| ||
Sbjct 630911 AGCTTCAGTCACTTGCACTTCCTGGGAGAACCTTTCCACAAGGTTCTCATTAACAATCCC 630852
Query 50231 ATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAA 50290
|||||| || || |||||||| || || | ||| |||||||| ||||| ||||| |
Sbjct 630851 ATCAGAAGCAGCAAAGAATGCCAAGACATGTTTGATAAAATGCCTTTCACAGTCTTTCAG 630792
Query 50291 ATTTTCCCAA 50300
||||||||
Sbjct 630791 GCTTTCCCAA 630782
>seq197
Length=620651
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||||| ||||| | ||| || || | ||| | |||||| || || || |||
Sbjct 446931 ATACCACCTCGCAGACGAAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCA 446990
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| ||||| || |||||||| ||||| | | ||| || || ||
Sbjct 446991 GACAGGGTGCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGA 447050
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || || || || ||| ||| ||||| |||| ||| | | ||
Sbjct 447051 GGGATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATAGTATCGGCTGGCTCG 447110
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || ||||| || ||||||||||| | || || | || ||||||||
Sbjct 447111 ACCTCAAGAGTGATAGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 447160
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||| || | ||||| || || | ||| | |||| ||| || || || || ||
Sbjct 447647 ATACCTCCGCGCAGACGCAAAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCG 447706
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| || || || |||| |||| ||||||||||| ||||| | | |||||| || ||
Sbjct 447707 GACAAGGTGCGACCATCCTCCAGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGGGA 447766
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || ||||| || || || ||||| || | ||||| | |||
Sbjct 447767 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCA 447826
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| || || ||||| || || || | ||||| | || ||||||||
Sbjct 447827 ACTTCCAGGGTGATGGTCTTTCCTGTCAGAGTTTTGACGAAAATCTGCAT 447876
Score = 87.8 bits (96), Expect = 4e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||| | ||||||||||| || || | || | ||| || ||| || || || ||
Sbjct 446250 CCACCACGGAGACGTAATACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAC 446309
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
|| || || |||| |||| |||||||| || ||||| | | ||| || || || ||
Sbjct 446310 AAGGTGCGACCATCCTCCAGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGA 446369
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
|| || || || || || || || |||||||| || | || || | ||| |||
Sbjct 446370 ATACCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCAACT 446429
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| ||||| ||||| || || || | || || | || |||||||||
Sbjct 446430 TCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCATT 446477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984457371111900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |