Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq65 104 4e-17 seq197 100 5e-16 >seq65 Length=1244346 Score = 104 bits (114), Expect = 4e-17 Identities = 109/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 39145 AACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCT 39204 ||||| | || || || || |||||||| || || || | ||| ||||| | ||||||| Sbjct 631697 AACCT-CATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCT 631639 Query 39205 TTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAA 39264 |||||||||| || || ||||| ||||| | ||| ||||| || ||||| || ||| | Sbjct 631638 TTTTAAGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGA 631579 Query 39265 ATGCTATTATTCTTGCTCCAAA 39286 |||||| ||||||| | || || Sbjct 631578 ATGCTACTATTCTTTCACCGAA 631557 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 39417 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCT 39476 || |||||||||||||||||| ||||| || ||||| ||| || || || ||| Sbjct 630967 GAGTACATTTCAGAATGTACATTCTCCATGGCGATTTGGAATCCGTAGAAGCATCTAGCT 630908 Query 39477 TCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 39536 || | || ||||| |||| | ||| || | |||||| ||||| |||||| Sbjct 630907 TCAGTCACTTGCACTTCCTGGGAGAACCTTTCCACAAGGTTCTCATTAACAATCCCATCA 630848 Query 39537 GATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 39596 || || || |||||||| || |||| ||| |||||||| ||||| ||||| | || Sbjct 630847 GAAGCAGCAAAGAATGCCAAGACATGTTTGATAAAATGCCTTTCACAGTCTTTCAGGCTT 630788 Query 39597 TCCCAA 39602 |||||| Sbjct 630787 TCCCAA 630782 >seq197 Length=620651 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| || || | ||| || || | ||| | |||||| ||| || || || Sbjct 446931 ATACCACCTCGCAGACGAAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCA 446990 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || ||||| || |||||||| || || | | ||| ||||| || Sbjct 446991 GACAGGGTGCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGA 447050 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || ||| ||| ||||| |||||||| | | || Sbjct 447051 GGGATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATAGTATCGGCTGGCTCG 447110 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||||||||| | || || | ||| |||||||| Sbjct 447111 ACCTCAAGAGTGATAGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 447160 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || || || || | ||| | |||| ||| || ||| || || || Sbjct 447647 ATACCTCCGCGCAGACGCAAAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCG 447706 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || |||| ||||||||||| || || | | ||||||||| || Sbjct 447707 GACAAGGTGCGACCATCCTCCAGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGGGA 447766 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || || ||||| || || ||||| | ||| Sbjct 447767 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCA 447826 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| || || || | ||||| | ||| |||||||| Sbjct 447827 ACTTCCAGGGTGATGGTCTTTCCTGTCAGAGTTTTGACGAAAATCTGCAT 447876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905115702325200