Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq1039 470 8e-128 >seq1039 Length=27060 Score = 470 bits (520), Expect = 8e-128 Identities = 674/943 (71%), Gaps = 10/943 (1%) Strand=Plus/Minus Query 59266 GCCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACC 59325 ||| | ||||||||| || ||||| || ||||| || || |||||||| ||||| Sbjct 13189 GCCGTTAACTGGAACAAGATCCAGGACGAGAAAGATCTGGAAGTGTGGAACCGCCTGACC 13130 Query 59326 AACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACG 59385 | ||||||||||||||| || ||| |||| |||||||||| || ||||||||| || Sbjct 13129 AGCAACTTCTGGCTGCCGGAAAAGGTCCCGCTCTCCAACGATATTCCGGCCTGGCAAACC 13070 Query 59386 CTGACGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGAC 59445 |||| | ||||| || ||||| || ||||| |||||||||||| |||| ||| Sbjct 13069 CTGAGCCACACCGAGCAGCAGCTAACGATCCGCGTCTTTACCGGCCTGACGCTGCTGGAC 13010 Query 59446 ACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCACGAG 59505 || || ||| ||||| || || | ||||| ||||||| | ||||||||||| Sbjct 13009 ACCATTCAGAATACCGTTGGCGCACCGGCTCTGATGGGTGACGCGCTGACGCCGCACGAA 12950 Query 59506 GAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGCAAC 59565 ||||||||| |||||||| || |||||| |||||||||| ||||||| Sbjct 12949 GAGGCGGTGATGTCGAACATCAGCTTTATGGAGGCGGTGCACGCCCGCTCCTACAGCTCG 12890 Query 59566 ATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAGGAG 59625 || ||||| ||||||||| | |||| || | |||||||| | | |||| || | | Sbjct 12889 ATTTTCTCCACGCTGTGCCAGACCAAAGACGTGGACGCGGCCTACGCCTGGAGCGAAGCG 12830 Query 59626 AATCCGAACC--TGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGTGACGATC 59683 | ||| | | ||| | ||||| || | || ||| || || | || ||||| | Sbjct 12829 AG--CGAGTCGTTACAAAGAAAGGCGGAGCTGGTGCTGACGTATTATCGGGCCGACGAGC 12772 Query 59684 CGCTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTCT 59743 |||||||| |||| | ||| ||| ||||| ||||| ||||| || ||||||| Sbjct 12771 CGCTGAAGAAGAAGATCGCCAGCGTGTTTCTGGAATCATTCCTCTTCTATTCTGGCTTCT 12712 Query 59744 ACCTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATCCGGC 59803 ||||| ||||||||||| || || || ||||| || ||||| ||||| |||| || | Sbjct 12711 GGCTGCCCATGTACTGGTCAAGCCGCGGCAAGCTCACCAACACCGCCGATTTGATTCGCC 12652 Query 59804 TCATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGCC 59863 ||||||| || || || ||||||||||| || |||||||| || || | ||| || | Sbjct 12651 TCATCATCCGGGATGAAGCGGTGCACGGGTATTACATCGGCTATAAATATCAGAAAGGGC 12592 Query 59864 TGGAGAC--TCAGAACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGCT 59921 |||| | |||| ||| || ||||||||||| || | | || || | |||| Sbjct 12591 TGGAAAAGGTCAG--CGACGCGGAGCGCGAGGAGCTTAAAGGGTTTGCGCTCGATTTGCT 12534 Query 59922 ACTCGAGTTGTACGACAACGAGATTGAG-TACACGCAGGATCTGTACGACGGCGTGGGAC 59980 | || |||||||||||||| | ||| || || |||| ||||||| |||| || Sbjct 12533 GATGGATCTGTACGACAACGAGCT-GAGCTATACCGAGGAACTGTACGCCGGCACCGGCT 12475 Query 59981 TGACTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTCG 60040 | ||||| || || ||||| ||||||||||||||||||||||||||||||||| Sbjct 12474 GGGAGGAGGACGTGAAAGCCTTCCTCTGCTACAACGCCAACAAGGCGCTGATGAATCTCG 12415 Query 60041 GCTACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGGCAC 60100 ||||||| ||||||||||||| || | ||||| || ||||||| | | || | Sbjct 12414 GCTACGACGCGCTGTTCCCGCCGGAACTGGCGGAGGTTAACCCGGCGATTCTCTCCGCGC 12355 Query 60101 TGTCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGTGA 60160 |||| || || ||||| |||||||| |||||||| || || || |||| |||| Sbjct 12354 TGTCGCCCAACGCCGACGAAAACCACGATTTCTTCTCCGGGTCGGGTTCGTCGTACGTGA 12295 Query 60161 TTGGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCTA 60203 | ||||| || | || || || || ||||| ||||| || || Sbjct 12294 TGGGCAAAGCGGTGGAAACCGAGGATGAGGACTGGGATTTTTA 12252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258925538631144