Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq236 149 2e-30 seq190 89.7 2e-12 >seq236 Length=545527 Score = 149 bits (164), Expect = 2e-30 Identities = 200/273 (73%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| ||||||||||| || || |||||| | |||||| ||||| ||| Sbjct 327999 TCCATAGCCTTGATCAAACGACGCTGGATGTACCCAGTTTCGGCTGTTTTGACAGCAGTA 328058 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| | || || |||||||| |||||| | | |||| ||| ||| || || Sbjct 328059 TCGATAAGACCTTCTCGTCCTCCCATAGCGTGGAAGTAGAACTCTGACGG-CGTGAGACC 328117 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 | | | ||| |||| ||||| || | || ||| || || ||||||| |||| | Sbjct 328118 GGCGAGGTACGAGTTCTCGACGAACCCTCTCGACTCAGGACCGTAATCGTC---CTTGAT 328174 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||||| |||| |||||| || | | ||| | || || |||||||| |||||||| || Sbjct 328175 GAAGTGGGGCAAGGTCCTCTTACGAAAACCGAAAGGAATTCGCTTTCCTTCAACGTTTTG 328234 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||| | || | ||| | ||| ||||| || Sbjct 328235 CTGTCCTACACAAGCAATAACCTGAGAAATGTT 328267 >seq190 Length=632835 Score = 89.7 bits (98), Expect = 2e-12 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 252550 TTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGA 252609 || |||| || | ||| | || ||||| ||||||||||| ||||| ||||||||||| Sbjct 369354 TTGGTAATGTAGACACCCATAGCTTGCTTACCCATAGCACTTTGGTAGGTATTTCTGGGG 369295 Query 252610 GACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACAACACCGAAGATAGTGCTTGGG 252669 ||| |||| || ||||| ||||| ||||| |||||| || || | ||| Sbjct 369294 CTCTGGTTGTGATCAGGGAATGGAATAATGGATGCACAAACACCCAATATCATAGCTGGA 369235 Query 252670 TGAATTTCACAGTGACTGTAA-TGATACA 252697 ||||| ||||||||| ||||| || |||| Sbjct 369234 TGAATCTCACAGTGAGTGTAAGTGGTACA 369206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471783769352578