Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq1001 246 7e-61 >seq1001 Length=29257 Score = 246 bits (272), Expect = 7e-61 Identities = 781/1200 (65%), Gaps = 83/1200 (7%) Strand=Plus/Plus Query 25509 GACTATCACCACGGCGTAACCGTCGTCGAAGATAACACCGGCGTCCGTCCGATCACCACG 25568 |||||||| |||||||| ||| |||| |||| ||| || | || |||| Sbjct 6704 GACTATCATCACGGCGTCGAGGTCATCGAGATTAACGATGGCACGCGCACCATTTCCACC 6763 Query 25569 ATCTCGACGGCCGTTATCGGTGTCGTCTGTACCGGCGACGATGCCGACCCGATCACGTTC 25628 | ||||||||| | ||||| | ||||| || | | |||||| ||| | | || ||| Sbjct 6764 GTTTCGACGGCCATCATCGGCATGGTCTGCACGGCCAGCGATGCTGACGCAAAGACATTC 6823 Query 25629 CCGCTGAACAAGCCGGTGCTGCTCACGAACGTGCAGGCCGCGCTCGGCAAGGCGGGCCGA 25688 || | ||| ||||||| ||| | | | |||||| | || |||| || || || | Sbjct 6824 CCCTTAAACGAGCCGGTACTGATTAACAGCGTGCAAACGGCTATCGGTAAAGCCGGTAAA 6883 Query 25689 AAGGGCACGCTGTACACGACGCTCGATGCGATCCAGAAACAGGCCCGCCCGTACACCGTC 25748 || ||||||||| | | || | || ||| | ||| | ||| || || Sbjct 6884 AAAGGCACGCTGGCAAAATCCCTGCAGGCCATCGCCGACCAGTGCAAACCGGTCATTGTG 6943 Query 25749 GTGGTGCGCGTCCCGCAAGG------------------CAAGGATTCGGCG------GAA 25784 ||||||||||| || |||| | ||| ||||| ||| Sbjct 6944 GTGGTGCGCGTTCCAGAAGGTGTCGACGACCCGGCAGACCCGGAAGCGGCGCAGAAAGAA 7003 Query 25785 ACCACGTCGAACATTGTCGGCACCGTGAATGCCGA---CGGCACGAAAACCGGGCTCAAG 25841 |||| || ||||| ||||||| || | ||| ||||| | |||||||| || Sbjct 7004 ACCATTTCCAACATCATCGGCAC---GACCGACGAAAACGGCAAATACACCGGGCTGAAA 7060 Query 25842 GCGCTCGAATCGGCG----CCGTCCGTGGTGCAGGTGAAGCCGCGGATTCTGGCGGTTCC 25897 ||||| | ||||| ||||| || | | |||||||| ||||| | || || Sbjct 7061 GCGCTGTTAACGGCGAAAACCGTCACCGGCG----TTAAGCCGCGCATTCTCGGCGTGCC 7116 Query 25898 GGGGCTCGATACGCAGCCCGTCGCGAACGCGCTGGCATCCACCGGGCAACTGCTGCGTGC 25957 |||||| ||||||||| || |||| |||||| || || ||| | || ||||| || Sbjct 7117 GGGGCTGGATACGCAGGAAGTGGCGACCGCGCTTGCGTCAACCTGCCAGAGCCTGCGCGC 7176 Query 25958 GATGGCGTACGT---CGCGGCTCGCAACGAGACGGGGGAACTGGTCGCCACGCAGGAAGA 26014 | | | ||||| |||| || | |||| | | || | |||| | | Sbjct 7177 GTTCGGCTACGTAAGCGCGTGGGGCTGCAAGACC-----ATT--TC-CGACGCCATCAAA 7228 Query 26015 GGCGGTGGCCTACCGGAAGAAGTTCGGTCAACGCGAAGTGATGGTGATCTGGCCGGATTT 26074 ||||| |||| ||| | || ||||| ||||||| || || || || Sbjct 7229 ----------TACCGTGAGAATTTCAGCCAGCGCGAGCTGATGGTCATTCACCCTGACTT 7278 Query 26075 CGTCGCATGGGACGACGCCGCGT-CGAAA--GAGGTTGAA---GTGCCCGCCGTAGCGTA 26128 | ||||||||| | | ||| ||||| || ||| | | | ||||| ||| Sbjct 7279 TCTGGCATGGGACACCACGGCGAACGAAACCGATATTGCATGGGCGACCGCCC--GCG-- 7334 Query 26129 TGCGGTCGGCCTGCGCGCGAAGATCGATCAACAAACCGGCTGGCATAAGACGCTCTCGAA 26188 || ||||||||||||| || ||||| || | ||||| ||||| || ||||| || || Sbjct 7335 --CGCTCGGCCTGCGCGCCAAAATCGACCAGGAGACCGGATGGCACAAAACGCTGTCTAA 7392 Query 26189 CGTCGCTGTGAATGGCGTCGAAGGGATCAGCAAGCCGGTTTCGTGGGATTTGCAGAACCC 26248 ||| | |||||||||||| || ||||| |||| || |||||||||||| | | Sbjct 7393 CGTTGGCGTGAATGGCGTCACCGGCGTCAGCGCCTCGGTCTCATGGGATTTGCAGGAGCA 7452 Query 26249 GGCGACCGATGCGGGTTTCCTCAACGAGAATCAGGTCACGACGCTGATCAACCGGAACGG 26308 ||| ||||| || | || || || ||| || ||||| ||| | |||| Sbjct 7453 GGCTACCGACGCCAACCTGCTGAATCAGGCCGGGGTGACAACGCTAATCCGCAACGACGG 7512 Query 26309 CTTCCGATTCTGGGGCTCGCGCACGGCGTCCGACGATCCGCTGTTCGCGTTCGAAAACTA 26368 ||| ||||||||| || || || |||||||| | |||| ||| |||||||| Sbjct 7513 CTTTAAGTTCTGGGGCAACCGTACCTGCTCGGACGATCCTTTATTCGTGTTTGAAAACTA 7572 Query 26369 CACGCGCACGGCGCAGGTGCTGGCCGATACGATGGCCGAAGCACAGA--TGGTCGTTATC 26426 ||| ||||||||||||||||||||||| |||||||| || || || ||| || || Sbjct 7573 CACCCGCACGGCGCAGGTGCTGGCCGACACGATGGCGGAGGCGCACGCGTGGGCG--ATG 7630 Query 26427 GACG-GCGCGATGATTCCGG--CGCTACCGCGCGACGTGATCGAGGGCATCAACGCAAAA 26483 ||| || || | |||| |||| |||||| | ||| || ||||| || ||| Sbjct 7631 GACAAGCCCGTT---TCCGCAACGCTTATCCGCGACATTGTCGCCGGTATCAATGCCAAA 7687 Query 26484 ATGCGTGAAATGAAAACCAAGGGCCAGTTGATCGGCGGCTCGGCGTGGTTCGACGCGGAA 26543 | || || |||||| || ||| | | | | ||| || |||| |||| |||| Sbjct 7688 TTCCGCGAGCTGAAAAATAACGGCTATATCGTTGACGGGTCATGCTGGTACGACCCGGAG 7747 Query 26544 CAGAACGGCGTTGTGGCGCTGAAAGATGGCAAAGCGGTG-ATCAATTACGACTACACGCC 26602 ||| ||| | | ||||||| || || || || ||| ||||||||||||| || Sbjct 7748 TCAAACACCGTGGAAACCCTGAAAGCCGGGAA-GCTGTATATCGATTACGACTACACCCC 7806 Query 26603 GGTGCCCCCGCTGGAAAACCTCACGCTGCGCCAGAAGATCACCGACCAGTATCTGGCCGA 26662 || || |||||||||||||| || ||||||||| |||||||| |||||||| || Sbjct 7807 CGTCCCGCCGCTGGAAAACCTGACCCTGCGCCAGCGCATCACCGATACCTATCTGGCTGA 7866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113251987256576