Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq962 266 4e-66 seq974 187 3e-42 >seq962 Length=32987 Score = 266 bits (294), Expect = 4e-66 Identities = 851/1300 (65%), Gaps = 55/1300 (4%) Strand=Plus/Minus Query 152160 GCCCGTTCATACATTGAGTATCGCCACGATCGCGACATTGCCCGTGAACAGAAAAGCAAG 152219 ||||| | ||||||||||| ||||||||||| ||| | |||||| || | Sbjct 25851 GCCCGCGCCTACATTGAGTACCGCCACGATCGTGACGTGCAGCGTGAAAAGCGCGGTCGC 25792 Query 152220 CTGTTCTCTGATATCTCCGGCATGGTGAACCTGTCCAACAAAGAGATCACCAACGAGAAC 152279 ||| | || ||| ||| |||| | | | ||||| | | ||| || ||| Sbjct 25791 CTGAACCAGGAGATCCGTGGCCTGGTAGAGCAGACCAACTCTGCCCTGCTCAATGAAAAC 25732 Query 152280 GCGAACAAAGATGCAAGGGTATTCCCGACACAGCGCGATTTGCTGGCGGGTATCGTAGCG 152339 || |||||||| | || |||| || ||||||||| ||||||| |||||||| || Sbjct 25731 GCCAACAAAGACAGTAAAGTGATCCCCACCCAGCGCGATCTGCTGGCCGGTATCGTCGCC 25672 Query 152340 AAGCATTTCGCCCGTAATCATATCCTCCCGAAACATATCGTAGAAGCGCATGATTCCGGT 152399 || || | |||||| | || | || ||| || | || |||||| || |||| Sbjct 25671 AAACACTATGCCCGTCAGCACCTGCTGCCGCGCGATGTGGTCTCAGCGCACGAGCGCGGT 25612 Query 152400 GACATCCACTATCACGATCTGGACTATAGCCCGTTCACCCCTTACACTAACTGCTGTCTG 152459 || ||||||||||||||||| |||||| |||||| ||| ||||| ||| Sbjct 25611 GAGATCCACTATCACGATCTCGACTATTCACCGTTCTTCCCGATGTTCAACTGTATGCTG 25552 Query 152460 GTTGACCTGAAAGGTATGCTGGAGAACGGTTTTAAAATGGGTAACGCGGACATTGAACCG 152519 ||||||||||||| |||||| |||| ||||||||||||||||| || ||||||||| Sbjct 25551 ATTGACCTGAAAGGCATGCTGACCCACGGGTTTAAAATGGGTAACGCCGAGATTGAACCG 25492 Query 152520 CCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACCGCACAGATTGCCTCT 152579 || ||||| ||| || || || ||| ||| ||||| | ||| ||| | ||| Sbjct 25491 CCAAAATCCATCTCCACCGCCACTGCGGTCACGGCACAGATTATCGCCCAGGTCGCCAGC 25432 Query 152580 CACCAGTACGGCGGGACAACCTTTGCGAACGTGGATAAAGTGCTGGCTCCATACGT---C 152636 ||| |||||||| || ||| || | | || |||||||||| || | || | Sbjct 25431 CACATTTACGGCGGCACCACCATTAACCGCATTGACGAAGTGCTGGCCCCGTTTGTGACC 25372 Query 152637 GAAATGACATTCTTCAAACATCTGCACGA-TGCTGAACATTACGGTATCGAACACTATAA 152695 | | | ||| ||| || | ||| | || ||| | | || | || | | | Sbjct 25371 GCA---AGCTTCAACAAGCA-CCGCAAAACGGCCGAAGAGT--GGCA--GATCCC--GGA 25322 Query 152696 TGATTATGTGTATGCGATTGAAAAGACTGAAAAAGATGTG-TATGATGCGTTCCAGTCCT 152754 | | | |||||| ||||| ||||| ||| ||||| ||||||||||| Sbjct 25321 CGCCGACGGCTATGCGCACTCGCGCACTGAGAAAGA-GTGCTATGACGCGTTCCAGTCGC 25263 Query 152755 ATGAGTATGAAGTAAACACCCTACATACTGCCAACGGACAAACCCCGTTTGTTACCATCA 152814 |||||||| || || ||||| ||||| |||||||| || || |||||||| ||| || Sbjct 25262 TGGAGTATGAGGTGAATACCCTGCATACCGCCAACGGCCAGACGCCGTTTGTGACCTTCG 25203 Query 152815 CTTTCGGTACTGGTACGAGCGATTATGAA---CGCATGATCCAGAAAGCGATCCTGAAAA 152871 ||| || || || ||| | ||| || |||||||| | | |||||| | Sbjct 25202 GTTTTGGCCTGGGCACCAGC---TGGGAATCGCGTTTGATCCAGCAGTCCATCCTGCGCA 25146 Query 152872 ACCGTATTCGCGGCCTTGGTAAAGAGGGTATTACTCCGGTATTCCCGAAACTGGTTATGT 152931 ||||||| |||||| ||||| | | | || |||| |||||||||||||| | Sbjct 25145 ACCGTATCTCCGGCCTCGGTAAGAACCGCAAAACGGCGGTGTTCCCGAAACTGGTATTCG 25086 Query 152932 TCATGGAAAAAGGAATTAACCTTGATCCAGAGGATCAAAACTATGACATCAAACAACTTG 152991 ||| | || | |||| | | |||| || || ||||||||||| || | Sbjct 25085 CCATCCGCGACGGGCTGAACCACAAAGTTGGCGATCCGAATTACGACATCAAACAGCTGG 25026 Query 152992 CCCTGGAATGTGCTTCGAAACGCATGTACCCAGATATCATTAGCGCATCTAATAACCGCC 153051 | ||||| || || || ||||||||||| ||||| | | | | || | | | Sbjct 25025 CGCTGGAGTGCGCGAGCAAGCGCATGTACCCGGATATTCTGAAC---TACGATCA-GGTC 24970 Query 153052 GTA----TCACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGCAGTTTCCTTAGC 153107 ||| | || || | | || | | | || |||||||| ||||| ||||| || Sbjct 24969 GTAAAAGTAACCGGGT----CATT--TAAAACGCCAATGGGTTGCCGCAGCTTCCTCGGC 24916 Query 153108 GTGTGGCATGATGATAACGGTAATGAAATTCTGGATGGACGTAATAACCTTGGTGTGGTG 153167 || | | ||||| ||||| | | || | || || ||||| ||||| || || | Sbjct 24915 GTATACGAAGATGAAAACGGCGAGCAGATCCACGACGGGCGTAACAACCTCGGCGTCATC 24856 Query 153168 ACAATCAACCTCCCGCGCATTGCGATCGAAGCTGAAGCACAGGAAGATGAAGACGCACAC 153227 | | ||||| |||||||| ||| | || || || ||| | ||||| Sbjct 24855 AGCCTGAACCTGCCGCGCATCGCGCTGGAGGC-----CAAAGGCA-ATGAA--------- 24811 Query 153228 GACGCATTCTGGCGCATCCTTGATGAACGTCTGGATCTGTGCTTTGAA-GCCCTGATGAC 153286 | | ||||||| | || |||||||| ||| | ||| || || || |||||||| Sbjct 24810 GCTGAATTCTGGACACTGCTGGATGAACGCCTGCAGCTG-GCGCGCAAGGCGCTGATGAC 24752 Query 153287 TCGTATCGAAAGCCTACGCGGTGTTAAAGCCAGTGTTGCGCCGATCCTGTACACAGAAGG 153346 ||||||| |||| || || |||||| | || ||||| ||||| || | ||||| Sbjct 24751 CCGTATCGCCCGCCTTGAAGGGGTAAAAGCCCGCGTGGCGCCTATCCTCTATATGGAAGG 24692 Query 153347 TGCTTTTGGTGTCCGACTGAAACCGGATGATGAAAT-TCTGGAACTGTTCAAAAATGGGC 153405 || | || || || |||||| |||| ||||| | ||| || | |||||||| || | Sbjct 24691 GGCCTGCGGCGTGCGCCTGAAAGCGGACGATGACGTCTCT-GAGATCTTCAAAAACGGCC 24633 Query 153406 GTAGCTCTATCAGCCTTGGTTATATCGGACTACATGAAAC 153445 | || || || || |||||||| | |||||||| Sbjct 24632 GCGCGTCGATTTCGCTGGGCTATATCGGCATCCATGAAAC 24593 >seq974 Length=31311 Score = 187 bits (206), Expect = 3e-42 Identities = 255/356 (72%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 41654 CCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTG 41713 |||||||| || ||| |||| ||||| || || || |||||||| | |||||| || Sbjct 356 CCTACGCCAATCATGTCTGGCGTGCGCACCCCAACCCGTCAGTTCAGCTCCTGCGTACTG 297 Query 41714 ATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTGAAGTAT 41773 || || | ||||| |||| ||| | || || || || |||||||| || Sbjct 296 ATCGAGTGTGGTGACAGCCTGGATTCCATCAACGCCACGTCCAGCGCCATCGTGAAATAC 237 Query 41774 ATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCGATGGGTTCTAAA 41833 |||| || ||||| |||||||| | |||||||| | || || ||| |||| Sbjct 236 GTTTCCCAGCGTGCCGGTATCGGCATCAACGCCGGTCGCATCCGTGCGCTGGGCAGCCCG 177 Query 41834 ATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAACATATTCAGACA 41893 || || || ||||||||| | || || ||| |||||||||| || || | ||||| Sbjct 176 ATTCGCGGCGGTGAAGCATTCCACACCGGCTGTATCCCGTTCTATAAGCACTTCCAGACG 117 Query 41894 GCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTGTATTATCCG 41953 ||||| |||||||| || || || || || || || |||||||| || ||| || || Sbjct 116 GCGGTAAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCT 57 Query 41954 ATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGA 42009 || ||||| ||||||| |||| ||||||||| |||||||||||| |||||||| Sbjct 56 ATGTGGCACCTGGAAGTGGAAAGCCTGCTGGTCCTGAAAAACAACCGTGGTGTTGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563785756820880