Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq962 134 2e-26 >seq962 Length=32987 Score = 134 bits (148), Expect = 2e-26 Identities = 530/828 (64%), Gaps = 23/828 (3%) Strand=Plus/Minus Query 171958 AAAGAAAACGCGAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTAGCAGGT 172017 || |||||||| || |||||| ||||||||||| || ||| || || | || ||| Sbjct 25740 AATGAAAACGCCAACAAAGACAGTAAAGTGATCCCCACCCAGCGCGATCTGCTGGCCGGT 25681 Query 172018 ACAGTTGCGAAACAATACGCACTCGAAGACTTTCTACCGAAGCACATTGCAGAAGCACAT 172077 | || || ||||| || || | | || | || ||| | | | ||| || Sbjct 25680 ATCGTCGCCAAACACTATGCCCGTCAGCACCTGCTGCCGCGCGATGTGGTCTCAGCGCAC 25621 Query 172078 ATAAGTGGCGATATTCATTTTCATGATTTAGATTACAGTCCATTATTTCCGCAATTCAAC 172137 | || || || || | ||| ||| | || || || || || ||| |||||| Sbjct 25620 GAGCGCGGTGAGATCCACTATCACGATCTCGACTATTCACCGTTCTTCCCGATGTTCAAC 25561 Query 172138 TGTATGCTTATTGATATCAAAGGCATGCTTGAAAACGGATTTAAAATGGGTAATGCTGAG 172197 |||||||| ||||| | ||||||||||| |||| |||||||||||||| || ||| Sbjct 25560 TGTATGCTGATTGACCTGAAAGGCATGCTGACCCACGGGTTTAAAATGGGTAACGCCGAG 25501 Query 172198 ATCGAAGAGCCAAACAGTATCGCGACTGCTGCGACTATTGTCACT---CAGATCATACAA 172254 || ||| |||||| ||| | || || ||| ||||| ||||| || Sbjct 25500 ATTGAACCGCCAAAATCCATCTCCACCGCC---ACTGCGGTCACGGCACAGATTATCGCC 25444 Query 172255 CAAGTAAGTAGTCACATTTACGGCGGCAACACTGTTAATAGAATTGACGAAGTTCTAGCA 172314 || || || |||||||||||||||| ||| |||| | ||||||||||| || || Sbjct 25443 CAGGTCGCCAGCCACATTTACGGCGGCACCACCATTAACCGCATTGACGAAGTGCTGGCC 25384 Query 172315 CCATATGTT--CGTAAGTCGTATTACAA--ATGGCTTGAGGTTGGTCGCGAAGAGCATCC 172370 || | ||| || ||| | |||| | || | | | | | | |||| Sbjct 25383 CCGTTTGTGACCGCAAGCTTCA--ACAAGCACCGCAAAACGGCCGAAGAGTGGCAGATCC 25326 Query 172371 CGATTCAGACTCAAAAGCAGCTATCTTTGCACGTAAACGTGTCGAGAAAGAAACGTACGA 172430 || ||| | | | ||||| | || || |||||||| || || Sbjct 25325 CG-----GACGCCGACG--GCTATGCGCACTCGCGCACT----GAGAAAGAGTGCTATGA 25277 Query 172431 CGCTTTTCAAACGTTTGAGTATCAAGTTAACACAATGCAGACTTCGAACGGTCAGACGCC 172490 ||| || || || | |||||| | || || || |||| || | ||||| |||||||| Sbjct 25276 CGCGTTCCAGTCGCTGGAGTATGAGGTGAATACCCTGCATACCGCCAACGGCCAGACGCC 25217 Query 172491 ATTCACGACGATTAACTTCGGTCTAGGTACATCGTGGGAAGAAAAGCTTATTCAGAAATG 172550 || ||| | || || || || || |||||| | || ||| | | Sbjct 25216 GTTTGTGACCTTCGGTTTTGGCCTGGGCACCAGCTGGGAATCGCGTTTGATCCAGCAGTC 25157 Query 172551 CATTCTGCAAAATCGAATTGCTGGTCTAGGCAAGACAAAGAAAACAGCGATTTTCCCGAA 172610 ||| |||| || || || | || || || |||| ||||| ||| | |||||||| Sbjct 25156 CATCCTGCGCAACCGTATCTCCGGCCTCGGTAAGAACCGCAAAACGGCGGTGTTCCCGAA 25097 Query 172611 ACTTGTATTCACTATCAAAGATGGTGTGAACTTGAAAGAAGGCGATCCGTGTTACGGCAT 172670 ||| |||||| | ||| || || ||||| |||| ||||||||| ||||| ||| Sbjct 25096 ACTGGTATTCGCCATCCGCGACGGGCTGAACCACAAAGTTGGCGATCCGAATTACGACAT 25037 Query 172671 TAAGAAGCTTGCACTTGAATGCGCAAGTAAGCGCATGTATCCAGATATCTTGAGCTATGA 172730 || |||| || || || ||||| || ||||||||||| || ||||| ||| ||| || Sbjct 25036 CAAACAGCTGGCGCTGGAGTGCGCGAGCAAGCGCATGTACCCGGATATTCTGAACTACGA 24977 Query 172731 AAAGCTAGTAGAAACAACTGGCGGGTTTAAGTCACCGATGGGATGTCG 172778 || | ||| || ||| || ||||| | || ||||| || || Sbjct 24976 TCAGGTCGTAAAAGTAACCGGGTCATTTAAAACGCCAATGGGTTGCCG 24929 Score = 118 bits (130), Expect = 2e-21 Identities = 235/343 (69%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 173221 TGGAAAGAACTGACTGGTTACGGATTTAGTCTGTACAGCACACCAAGCGAATCGCTATGT 173280 |||||||| || || ||||| || || |||||||| || |||||||| || || Sbjct 24492 TGGAAAGAGGAAACCGGCTACGGTTTCAGCCTGTACAGTACCCCAAGCGAGAACCTGTGC 24433 Query 173281 GATCGTTTCTGTCGTCTTGATCAAGAGAAGTACGGTATCATTACTGGTATCAATGACAAA 173340 || || ||||| ||||| || | ||| ||| ||| | || | | || ||| Sbjct 24432 GACCGCTTCTGCCGTCTGGACACCGCCGAGTTCGGCATCGTGGAAGGCGTGACCGATAAA 24373 Query 173341 GACTACTATACAAACTCGTTCCACTTAGACGTATTCAAGAAAGTGAATCCGTTCGAGAAG 173400 | ||||| || ||| |||||| | ||||| ||||| || || |||| ||| ||| Sbjct 24372 GGTTACTACACCAACAGCTTCCACCTCGACGTGGAGAAGAAGGTAAACCCGTACGACAAG 24313 Query 173401 ATTGACTTTGAAGCATCGTACCCAGCATAT-GCAAACGGCGGTTTCATTTGCTATGCAGA 173459 || ||||||||||| |||| || || || || |||||||| ||||| ||||| | || Sbjct 24312 ATCGACTTTGAAGCGGCGTATCC-GCCGATCGCCAACGGCGGCTTCATCTGCTACGGCGA 24254 Query 173460 GTTCCCGAACATGCGCGACAATATCAAAGGTCTAGAACGTGTATGGGATTA-TGCTCATA 173518 || ||||||||| | |||| | || | || ||| || |||||||| ||| | Sbjct 24253 GTACCCGAACATTCAGCACAACCTGAAGGCGCTGGAAGACGTGTGGGATTACAGCTATCA 24194 Query 173519 GCAAAGTTGCTTACTTCGGTACAAACACACCGATTGATCAATG 173561 || | || | || | ||| || ||||| || || || |||| Sbjct 24193 GC-ATGTGCCATATTACGGCACCAACACGCCCATCGACGAATG 24152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791889441481040