Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq754 251 1e-61 >seq754 Length=71200 Score = 251 bits (278), Expect = 1e-61 Identities = 247/319 (77%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 98892 ACTATGAAACAGTATCAAGATTTAATGGCTGAAGTCTTTGCGAAAGGTACGCCGAAGAAA 98951 || ||||||||||||| || || ||| |||| | | | || |||||||| || Sbjct 66013 ACCATGAAACAGTATCTTGAATTGATGAAAAAAGTGCTCGATGAGGGCACGCCGAAAAAC 66072 Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||||||||| || || ||||| || || || |||||||||||||| ||||| || || Sbjct 66073 GACCGTACCGGCACCGGTACGCTCTCCATTTTTGGCCACCAGATGCGCTTCAATTTACAG 66132 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071 ||||| ||||| ||||| ||||| ||||| ||||| |||||||| || || ||||||||| Sbjct 66133 GAAGGCTTCCCTCTGGTGACGACTAAGCGCTGCCATCTGCGCTCGATCATTCATGAACTG 66192 Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131 || ||||||||| ||||||| ||||| | ||| ||| | || || || |||| Sbjct 66193 CTCTGGTTCCTGCAAGGCGATACCAACGTTGCGTATCTGCACGAAAACAACGTCTCCATC 66252 Query 99132 TGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCGG 99191 |||||||||||||| || |||| ||| |||| || ||||| ||||| ||||||||||| Sbjct 66253 TGGGACGAATGGGCAGATGAAAACGGCAACCTGGGCCCGGTTTACGGCAAGCAGTGGCGC 66312 Query 99192 GCATGGACTGCGCATGATG 99210 |||||| | ||| ||||| Sbjct 66313 GCATGGCCAACGCCTGATG 66331 Score = 138 bits (152), Expect = 2e-27 Identities = 225/324 (69%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 99585 AAGTTGTCTTGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAAC 99644 ||| | || || |||||||| |||||| || |||||| | || ||||||||||| Sbjct 66487 AAGCTCTCCTGCCAGCTCTACCAGCGTTCCTGTGATGTGTTCCTCGGCCTGCCGTTTAAC 66546 Query 99645 ATCGCGTCGTATGCTCTACTGATTCACATGTTTGCACAGCAGGCGAATATGGCGGTGGGC 99704 || || ||||| || | | || ||| | || |||||| | ||| ||||| Sbjct 66547 ATTGCCAGCTATGCGCTGTTAGTCCATATGATGGCGCAGCAGTGTGACCTGGAAGTGGGG 66606 Query 99705 GATTTCGTCTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCACGT 99764 ||||| ||||||||||| || || ||||| || |||||| |||| ||| | | | Sbjct 66607 GATTTTGTCTGGACCGGTGGGGACACCCATCTCTACAGCAACCATATGGAGCAGACCCAT 66666 Query 99765 ACTCAGTTAGGTCGTACTCCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCCGGAC 99824 ||| | || ||||| ||| |||| ||||| || ||||| || || |||| Sbjct 66667 CTCCAGCTGACCCGCGAACCGCGCGCGCTGCCGAAGCTCATCATCAAGCGCAAACCGGCG 66726 Query 99825 TCTATCTTCGACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGGCT 99884 || ||||| ||||| ||||| |||||||| || || ||||||||||| ||||| | Sbjct 66727 TCAATCTTTGACTACCGCTTCGATGATTTTGAGATTGAGGGCTACGACCCGCACCCTGGC 66786 Query 99885 ATTAAAGCACCGGTGGCGATATGA 99908 || ||||| || || || || ||| Sbjct 66787 ATCAAAGCGCCCGTCGCTATCTGA 66810 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 99307 ATATCGACCAGATTGCCAAAGTCATGGGCCAGTTGAAAAACGACCCGGATAATCGGCGTA 99366 |||| |||||||| ||| || ||| |||| |||||||||| || || || || | Sbjct 66338 ATATTGACCAGATCACCACCGTGATGAACCAGCTGAAAAACGATCCAGACTCGCGCCGAA 66397 Query 99367 TCATCGTTAGTGCATGGAACGTAGCTGACCTTGACGATATGGCCTTAGCTCCTTGCCACG 99426 |||| ||| || |||||||| | || || ||| | ||||| | || || ||||||| Sbjct 66398 TCATTGTTTCCGCCTGGAACGTCGGCGAGCTGGACAAAATGGCGCTGGCACCGTGCCACG 66457 Query 99427 CCTTCTTCCAGTTTTA 99442 | ||||||||||| || Sbjct 66458 CGTTCTTCCAGTTCTA 66473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716620729419760