Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021561.1 Length=37324 Score E Sequences producing significant alignments: (Bits) Value seq997 250 6e-62 >seq997 Length=29618 Score = 250 bits (276), Expect = 6e-62 Identities = 557/822 (68%), Gaps = 13/822 (2%) Strand=Plus/Minus Query 31841 ACTTCCAAAGTAAGGAAT-AGCAAATGGCTACTACAGTAAACTCTGATTTAGTAATCTAC 31899 |||||| || ||||| || | | ||| |||| || || || ||| | | || || Sbjct 9721 ACTTCCGAAATAAGGGATTAACCCATGTCTACCACTGTTAATAGTGACCTGATCATTTAT 9662 Query 31900 AATGACACGGCCCAGACTGCGTACCTAGAGCGCAACATGGACAACCTAGCTGTGTTCAAT 31959 | ||| ||| ||||| || | || |||||| ||||||||| ||| | ||||| Sbjct 9661 GACGACCTGGCGCAGACCGCTTTTCTCGAGCGCCGTCAGGACAACCTGGCTATTTTCAAC 9602 Query 31960 GAAAACTCACGCGCTGCGATTGGCCTGAACTCTGAGCTAATCGAAGGTGACTTGAAGCTA 32019 | ||| || |||||| ||| | ||||| || ||||| || || || | Sbjct 9601 GCGTCCTCCAACGGTGCGATCCTGCTGGATAACGAGCTGATTGAAGGCGATTTCC-GCAA 9543 Query 32020 -CGCTCGTTCTACAAAGTGGGCGGCTCTATCGCTGACCGTGATGTGAATTCAACGGCTAC 32078 || | |||||||||||||||||||| |||| ||||| || || || || | || Sbjct 9542 GCGAGCCTTCTACAAAGTGGGCGGCTCAATCGAATCGCGTGACGTTAACTCCACCGATAA 9483 Query 32079 CGTTGCAGGTATTAAGATTGCAGCGGATGAAATGGTATCAGTGAAAGTGCCTTGGAAATA 32138 || | |||| ||||||| || | |||| ||||| || |||| || |||||||| Sbjct 9482 AGTGACGGGTAAGAAGATTGGCGCCGGTGAAGCCGTATCCGTCAAAGCACCGTGGAAATA 9423 Query 32139 CGGCCCATACGAAACCACAGAAGAAGCGTTTAAGCGTCGCGCACGTTCGCCTGAGGAATT 32198 ||| ||||||||||| || ||||||||||| || || |||| || ||| ||| || || Sbjct 9422 CGGTCCATACGAAACTACTGAAGAAGCGTTCAAACGCCGCGGCCGCTCGGTTGATGAGTT 9363 Query 32199 CTCTGAAATCATCGGTCAAGACATGGCAGACGCTACAATGTCAGGTTGGATTGGTTACGC 32258 ||| ||| | ||||| || |||| |||||||| || ||| | | |||| Sbjct 9362 CTCAGAAGTGATCGGCACTGATGTGGCTGACGCTACGCTGGAAGGCTACGTGAAATACGG 9303 Query 32259 ATTGAATGCACTACAAGGC-GCAATCGGCTCTAACGCCGGCATGAACGTATCTGGCGAGC 32317 ||||| || || | ||| ||||| ||| | ||||| | ||| || ||| || Sbjct 9302 CTTGAAGGCCCT-GACGGCAGCAATTGGCGCCAACGCGGATATGGTGGTCACTGCAGACA 9244 Query 32318 TTGCAACTGAAGGTAAGAAAGTTCTTACCAAAGGTTTGCGCACAATGGGCGACAAAGCAT 32377 ||| || || |||||||| || || || |||| | |||||||| | Sbjct 9243 TTGAGACCGACGGTAAGAAGACCCTGACACGTGGCCTGCGTAAGTACGGCGACAA--GTT 9186 Query 32378 CATC--TATCGCAATCTGGGTGATGGATTCAACGTCTTACTTTGACATCGTTGACGAGGC 32435 || | | ||| ||| || ||| | || | | ||||| |||||||| || ||||| Sbjct 9185 CAACCGTGTCGTGCTCTTCGTTATGCACTCCGCTACCTACTTCGACATCGTGGATGAGGC 9126 Query 32436 GATTGACAACAAGCTTTATGAAGAAGCTGGTGTTGTGGTTTACGGTGGTACA-CCTGGCA 32494 ||| | |||||| | || |||||||| || || ||||||||||| || ||| || |||| Sbjct 9125 GATCGCCAACAAAATCTACGAAGAAGCGGGCGTAGTGGTTTACGGCGG-ACAGCCGGGCA 9067 Query 32495 CGCTTGGTAAGCCTGTGCTTGTTACTGA-CCAATGCCCAGCAACTAAGATTTTCGGTCTT 32553 | || ||||| || ||||| ||||| || | ||| | || | ||| | || || Sbjct 9066 CCCTGGGTAAACCGGTGCTGGTTACCGATACCATGGAC-GCTGATGCGATCCTTGGGCTG 9008 Query 32554 GTAGCTGGCGCGGTAATGGTTACTGAGTCTCAAGCGCCTGGTATGCGCTCTTACCAAATC 32613 || || || || || | || ||||||||||| || || || | || || ||| | ||| Sbjct 9007 GTGGCCGGGGCAGTGACTGTAACTGAGTCTCAGGCTCCGGGGTTCCGTTCATACGACATC 8948 Query 32614 GACGACCAAGAAAACTTGGCTATCGGTTTCCGCGCTGAGGGC 32655 |||| || |||||| |||| ||||| | ||| ||||| ||| Sbjct 8947 AACGATCAGGAAAACCTGGCAATCGGCTACCGTGCTGAAGGC 8906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119312658138808