Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq986 942 0.0 seq960 176 1e-39 seq1102 109 1e-19 >seq986 Length=30461 Score = 942 bits (1044), Expect = 0.0 Identities = 988/1296 (76%), Gaps = 2/1296 (0%) Strand=Plus/Plus Query 23399 TTCAATATAGATTCTACCTATATATTCTCCGAGAACACCAATCCCGATCAGTTGCACTCC 23458 ||| ||||| || || || || || |||||||| |||||||| ||||| |||||||| || Sbjct 11779 TTCGATATAAATCCTTCCAATGTACTCTCCGAGCACACCAATGCCGATAAGTTGCACACC 11838 Query 23459 ACCCAAGAAAAGTATTGATACAAGCAGGGAGGGATACCCGCGTACTGGGTTACCAAAGAC 23518 ||| | |||||| || || ||||| | || ||||| || || || | || ||||| | Sbjct 11839 ACCAAGGAAAAGGATGGAGACAAGTAATGACGGATAGCCACGCACAGCATTGCCAAAAGC 11898 Query 23519 AAGGGTGTCTATAATCATCCATGCACCATATAAAAATGAAATGCTTGCAACAAACAAG-C 23577 || ||||||| |||||||||||| ||||| | ||||| | | |||||| |||||| | Sbjct 11899 CAGAGTGTCTACAATCATCCATGCGCCATAGAGAAATGCGAGACCTGCAAC-AACAAGCC 11957 Query 23578 CTATATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGATACCTTCCAGTGCCA 23637 | ||||| ||||| | ||| ||||| ||||| || ||||| |||||||| || || || | Sbjct 11958 CGATATAGGTCCACATGCGCAGAGGGAAGGTAGAGAAACTGGTGATACCCTCAAGAGCAA 12017 Query 23638 GATTCCATAATTTCCAGCCATTAAATTTTGAGATGCCAGCAACACGCTCTGCGCGTACAT 23697 | |||||||| ||||| ||||||||||||| |||| ||||| || || ||||| ||| Sbjct 12018 GGTTCCATAACTTCCAACCATTAAATTTTGTACTGCCTGCAACGCGTTCAGCGCGGGCAT 12077 Query 23698 ATTCCACGACATCCGTCTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAAGATTGC 23757 |||| || |||||||| ||||||| ||||||||||| | || |||||||| || || | Sbjct 12078 ATTCAACAACATCCGTGCGACCACCAACCCAGCTCAGAACTCCCTTCATGAAGAGGTTTC 12137 Query 23758 GCTCAGGCAACAGTTTAATGTTCTCCACAACCTCACGAGACATGAGTCGAAAATCTCCGA 23817 ||| |||| || || ||||| || || |||||||| ||||| || || ||||| |||| Sbjct 12138 TCTCTGGCATGAGCTTGATGTTTTCGACCACCTCACGGGACATCAGACGGAAATCACCGA 12197 Query 23818 CATTTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAATTTATAGAACCACTCAGCTG 23877 ||||||||||||||| ||| | || ||||||||||| || |||||||||||||| || | Sbjct 12198 CATTTTCCTCGATCTGCGGGTTACTGATTTTGTTGTGCAACTTATAGAACCACTCGGCAG 12257 Query 23878 TCTTACGTTTCAGTCGTCCATCAGTTGAGCGGTCTGAACGTTTAGCAAGCACCATGTCAG 23937 ||||||||||| || | |||||| |||||||| || || || || || |||||||| | Sbjct 12258 ATTTACGTTTCAGACGACTATCAGTGGAGCGGTCAGAGCGCTTGGCCAGTACCATGTCGG 12317 Query 23938 CACCTGCCTGCCACTTTTCAATAAGATGAGGGATAACCTCAATTGGGTCTTGCAGGTCGA 23997 | || |||||||| || || || ||||| || || |||||||||||||| |||| ||| | Sbjct 12318 CCCCGGCCTGCCATTTCTCTATCAGATGCGGAATGACCTCAATTGGGTCCTGCAAGTCTA 12377 Query 23998 CATCAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAACCCTGCAAATAAGGCTGGTT 24057 | ||||| || || | || || || | || ||||||| || || ||||| || || | Sbjct 12378 CGTCAATCGGGATAATTGCTTCACCTGTAGCGTGGTCTAGGCCGGCGAATAAAGCAGGCT 12437 Query 24058 CTTTACCAAAGTTGCGTGTAAATGACAGCGGAACAACTAGCGGGTCTGAAACAGCCAGCG 24117 |||| ||||||||||| || || || || ||||| || ||||| |||| || ||| |||| Sbjct 12438 CTTTTCCAAAGTTGCGGGTGAAGGAAAGAGGAACCACAAGCGGATCTGCAATAGCAAGCG 12497 Query 24118 CGTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCATTTATGAATACAATTTCTACTT 24177 |||| |||||||| || || |||||||| || |||||||| ||||| || || || |||| Sbjct 12498 CGTTTATAATTGATTCGGTCGCATCTTTGCTACCGTCATTGATGAAGACTATCTCAACTT 12557 Query 24178 CATATGGCTTCAACTCTTGGAATTCACGTACCGTTTTATAGAAAACAGGTATCGCTTCTT 24237 | | |||| ||| ||| || || || || | ||| ||||| | || || ||||| | Sbjct 12558 CCTGCTGCTTTAACCCTTCAAACTCCCGCACGGCTTTGTAGAAGATTGGAATTGCTTCCT 12617 Query 24238 CTTCATTGAAGACAGGAACGACAAGAGATATTTTCATTTCGCATCCCTAAAGACAATGAA 24297 ||||||| || || |||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 12618 CTTCATTAAACACCGGAACGACCAGAGAAATTTTCATTTCGCATCCCTAAAGACAATGAA 12677 Query 24298 CTTTGAATAGACGAAACCGCACACCAGACTGATGGCGGAGAAGGTGATAAGAGTGACTAT 24357 ||||||||||| ||| |||||||||||||||||||||||||| ||| | || | || Sbjct 12678 CTTTGAATAGATGAAGCCGCACACCAGACTGATGGCGGAGAAAACGATTAACGTAATAAT 12737 Query 24358 TGGAGGAAGTGAGCATTTATCAGCTGCCCAACCAACAATCACACTCAATATTCCCATAAA 24417 || | ||| |||| ||||| ||||||||| | |||| | |||||||| Sbjct 12738 CGGGGCAAGCCCTGATTTGTCAGCACACCAACCAACGGCGGCGCTCAGCGTACCCATAAA 12797 Query 24418 TCCCACGTAATACATGTAGCGCATCGCTGTAGTCGATGCTTTGAATGTGAATCTTGCATT 24477 || || || |||||||||||| | || || || | || || ||||| || || || Sbjct 12798 CCCTACATACAGCATGTAGCGCATGGTCGTTGTAGAAGACTTAAAGGTGAACCTGGCGTT 12857 Query 24478 CGCGAAGAAGCTAAAGCTCACAGCCACTACGAAACCTGTGAAGTTTGCCAGAGCCTGACT 24537 ||||| |||||||| ||| || ||||| || || | |||||| |||||||| || | Sbjct 12858 TGCGAAAAAGCTAAATGACACCGCAACTACAAATCCGGCGAAGTTAGCCAGAGCTTGCCC 12917 Query 24538 GGTATGTGCGGCATAGATACATACACCAAAAACCACCCAGTGTATAAGTGTGTTCAGCAC 24597 || || | | || ||| | | | || || |||||||| || || ||||| | || Sbjct 12918 TGTGTGGAAGACGTAAATAGAAATGGCGAACACAACCCAGTGAATGAGCGTGTTGATAAC 12977 Query 24598 ACCTATAGATGTGTACTTTACAAATAACTTTAACATTTATTTAATCAATGAGCTCTGAAA 24657 |||||| ||||||||| | | ||||||||||||||| ||||| ||| || |||| Sbjct 12978 ACCTATTGATGTGTACCTGGCGAATAACTTTAACATTATAGAAATCAGTGAATTCGGAAA 13037 Query 24658 GGCATGAAGTCTATCATCCAAGTCTCAATTGATCGA 24693 || |||||| || |||| | || |||||||| Sbjct 13038 GGTCTGAAGTGTAGCATCACACATGCACTTGATCGA 13073 >seq960 Length=33163 Score = 176 bits (194), Expect = 1e-39 Identities = 354/518 (68%), Gaps = 8/518 (2%) Strand=Plus/Plus Query 8730 CCGCCCGCGCAGCGGTGTTTATCCGCAACGAT-CCGGCACGTCCCACGCAGACCGGTGAG 8788 |||| ||| | |||||||| ||| | |||| || || ||||| || |||| |||| Sbjct 18192 CCGCGCGCACCGCGGTGTTCATCTCCGCCGATGCCAGC-CGTCCGACCCAGAGCGGTAGC 18250 Query 8789 CTGGTGGGTATGCTGCCTGCGCCGAAGGGGAAACGGTTCACGATGACCGAGCAGCAGACC 8848 ||| || || || || || | | || ||||| ||||||||| ||| | Sbjct 18251 CTGCCAGGCCTGGACCCGGCCGCGGCCAGCGAGCGTTTCACCCTGACCGAGCGCCAGTCG 18310 Query 8849 CTGCTGTCTCATGGCGTGGCAACGGCGTATGTCGAAAGCGGGGTGCTGCGCATTCAGCGT 8908 ||||| | ||| | || || || || |||| |||| ||||||| |||||| Sbjct 18311 CTGCTCAACTACGGCATCGCCACCGCCTACTACGAAGGCGGCTACGTGCGCATCCAGCGT 18370 Query 8909 GATGTCACCACGTACAGGAAAAATTCTTACGGGGTTGCGGATAACAGCTACCTCGACAGC 8968 |||| || ||| ||| || ||| ||| ||||| ||| |||||| |||||| Sbjct 18371 TCGATCACTACCTACCAGAAGAACGCTTTCGGCCAGGCGGACAACTCCTACCTGGACAGC 18430 Query 8969 GAGACGCTGCATACCAGT--GCGTATGTACTGCGCAAACTGAAATCCGTCATTACCAGTA 9026 ||||| ||||| ||||| || || | ||||| ||| || ||| || ||||| | Sbjct 18431 GAGACCCTGCA--CCAGTCGGCCTACATCGTGCGCCGCCTGCAAAGCGTGATCACCAGCA 18488 Query 9027 AGTACGGGCGTCACAAGCTTGCCAGCGACGGTACCCGCTTTGGTCCCGGTCAGGCGATTG 9086 |||||||||| |||||| | ||| ||| || |||||||| || |||| ||| |||| | Sbjct 18489 AGTACGGGCGCCACAAGTTGGCCGCCGATGGCACCCGCTTCGGCGCCGGCCAGCCGATCG 18548 Query 9087 TCACCCCG-GCGGTAATCAAAGGGGAACTGCTGGCAACCTACCGTCAGCTTGAGCGTGCG 9145 |||||||| || | || || || ||| | || ||| |||| |||| | Sbjct 18549 TCACCCCGAGCACCATTC-GCGGCGAGCTGATCGCCCAGTACGCCAAGCTGGAGCTGGAA 18607 Query 9146 GGGATCGTGGAAAACTACGAACTGTTTAAGCAGTACCTGGTTGTGGAGCGTGATGCCAGC 9205 || ||||||||| ||| ||||| || ||||||| ||||| || |||||| | Sbjct 18608 GGCCATGTGGAAAACGCCGAGCTGTTCGCCGAGCACCTGGTGGTGGAACGCGATGCCCGG 18667 Query 9206 GATCCGAACCGCCTGAACACGCTGTTCCCGCCTGACTA 9243 || ||||||||| | ||| |||||||||||| ||||| Sbjct 18668 GACCCGAACCGCATCAACGTGCTGTTCCCGCCGGACTA 18705 >seq1102 Length=22075 Score = 109 bits (120), Expect = 1e-19 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 24835 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAATCAATAAG 24894 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215 Query 24895 TTA 24897 ||| Sbjct 2214 TTA 2212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132595575156836