Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq486 145 9e-29 seq666 123 3e-22 seq216 120 4e-21 seq215 120 4e-21 seq203 105 8e-17 seq65 104 3e-16 seq19 91.5 2e-12 seq236 89.7 6e-12 >seq486 Length=217039 Score = 145 bits (160), Expect = 9e-29 Identities = 265/390 (68%), Gaps = 15/390 (4%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| |||||||||||||||| ||| | ||||| ||||||||||| || ||||| Sbjct 176150 GCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGCCCGTT 176209 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| ||||||| |||||||| | ||||| ||| || | | || | || Sbjct 176210 GGAGACGCCGTTCGTGCCCGCGATGTAGGTGCCTTTCGCTCTGATGCAATGAACATGAAC 176269 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || |||||||| || || ||||| || | || ||||| || || ||||||||||| || Sbjct 176270 TCCTATGCCGCCCGCGGATTTGGATATTAATGCACACTGCTTCAGAGTGTCGTAGATACC 176329 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||||| |||| |||||||| | | ||| || || || ||| || ||| | | || Sbjct 176330 TTCGATGCTGTCGTCCTTCATGGCGATGAGGAAACATGAGGAGAGCTGAGGGCGGGGGGT 176389 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 | |||| ||| || ||||| | || ||||| ||| | || | || ||| Sbjct 176390 GGCGGCCGAGAACAGGGTGGGGCTGGCGTGCGTGAAGTACTTCTCGGAGAGCAGGTTGTA 176449 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 ||||| | | || |||| | |||||| || | | |||||||| Sbjct 176450 GGTGGTG------------ATGGCGGCGTCGATGTCGGC---GCCGTGGATGCCGATGGA 176494 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTC 1630451 || ||||| ||||||| ||| |||||||| Sbjct 176495 CACCCGCATCAGCATGTGCTGCGGCCGCTC 176524 Score = 87.8 bits (96), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 ||||||| || || || || || ||||| || ||||| ||||| |||||| || | Sbjct 176017 TCCACAGAGCATAGAACAGCTCTCGCGCGCGCACTTCCTCTTTGCCCGTGTTCTTCTTCA 176076 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 ||| || | |||| ||||| |||||||||||||| |||||| ||| |||||||| Sbjct 176077 AGTCTAGGAACTCGAATATGTCAGCGTGCCACGGCTCGAGGTAGACGGCGAAGGCGCCGG 176136 Query 1628585 TGCGCTTGCCGCCGCC 1628600 |||||| |||||| Sbjct 176137 GCCGCTTGTTGCCGCC 176152 >seq666 Length=109244 Score = 123 bits (136), Expect = 3e-22 Identities = 185/261 (71%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 1573775 CCTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAG-- 1573832 |||||| |||||||| ||||| || || | | || |||||| || ||||||||| Sbjct 36503 CCTCCCATGGATCGAGAAGTACCGGCCGCAGACGTTCAGCGACATCGTGGGCAACGAGGA 36444 Query 1573833 CACGCCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTG 1573892 |||| ||||| | | | | | | || ||| || ||||||| | | | Sbjct 36443 CACGGTGTCGCGGCTGGCCGTGTTCGCCAAGTCG--GGCAACGCGCCCAACGTGATCATC 36386 Query 1573893 GCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTG 1573952 ||||| ||||| ||| |||||||||||| | ||| ||| |||||||| | ||| | Sbjct 36385 GCGGGCCCGCCGGGCGTGGGCAAGACCACCACGATCCTGTGCCTGGCGCGCGCCCTGCTA 36326 Query 1573953 GGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGAC 1574012 || || || | ||| ||||||||||| |||||||| || |||| |||||| ||||| Sbjct 36325 GGGGCCTCCTTCCGCGACGCCGTGCTCGAGCTCAACGCCTCCAACGACCGCGGCATCGAC 36266 Query 1574013 GTCGTGCGCAAGATCATCAAG 1574033 ||||||||||| | |||||| Sbjct 36265 GTCGTGCGCAACAAGATCAAG 36245 >seq216 Length=582351 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| ||| | || | ||||| |||||| | ||| | | | || Sbjct 33696 GCTTGGCGAGCTCACCGGGCAGCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGAGGTGA 33637 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| |||| || ||||| || || | | |||| || |||| | Sbjct 33636 TCGTCGAACGCTTGTTGTAGTGGGCGAGACGAGACGCTTCCGCGGCGATACGCTCGAAGA 33577 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||||| | ||| |||||| || |||||||| Sbjct 33576 TGTCGTTCACGAACGAGTTCATGATTGACATGGCCTTCGAGGAGATACCGGTGTCGGGGT 33517 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| | ||||||||||||| Sbjct 33516 GGACCTGCTTCAACACCTTGTAGATG 33491 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| ||| | || | ||||| |||||| | ||| | | | || Sbjct 48241 GCTTGGCGAGCTCACCGGGCAGCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGAGGTGA 48182 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| |||| || ||||| || || | | |||| || |||| | Sbjct 48181 TCGTCGAACGCTTGTTGTAGTGGGCGAGACGAGACGCTTCCGCGGCGATACGCTCGAAGA 48122 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||||| | ||| |||||| || |||||||| Sbjct 48121 TGTCGTTCACGAACGAGTTCATGATTGACATGGCCTTCGAGGAGATACCGGTGTCGGGGT 48062 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| | ||||||||||||| Sbjct 48061 GGACCTGCTTCAACACCTTGTAGATG 48036 >seq215 Length=584702 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| ||| | || | ||||| |||||| | ||| | | | || Sbjct 546867 GCTTGGCGAGCTCACCGGGCAGCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGAGGTGA 546808 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| |||| || ||||| || || | | |||| || |||| | Sbjct 546807 TCGTCGAACGCTTGTTGTAGTGGGCGAGACGAGACGCTTCCGCGGCGATACGCTCGAAGA 546748 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||||| | ||| |||||| || |||||||| Sbjct 546747 TGTCGTTCACGAACGAGTTCATGATTGACATGGCCTTCGAGGAGATACCGGTGTCGGGGT 546688 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| | ||||||||||||| Sbjct 546687 GGACCTGCTTCAACACCTTGTAGATG 546662 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| ||| | || | ||||| |||||| | ||| | | | || Sbjct 556361 GCTTGGCGAGCTCACCGGGCAGCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGAGGTGA 556302 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| |||| || ||||| || || | | |||| || |||| | Sbjct 556301 TCGTCGAACGCTTGTTGTAGTGGGCGAGACGAGACGCTTCCGCGGCGATACGCTCGAAGA 556242 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||||| | ||| |||||| || |||||||| Sbjct 556241 TGTCGTTCACGAACGAGTTCATGATTGACATGGCCTTCGAGGAGATACCGGTGTCGGGGT 556182 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| | ||||||||||||| Sbjct 556181 GGACCTGCTTCAACACCTTGTAGATG 556156 >seq203 Length=607560 Score = 105 bits (116), Expect = 8e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 1573893 GCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTG 1573952 ||||| ||||| ||| |||||||||||| | ||| ||| |||||||| | || | Sbjct 82985 GCGGGCCCGCCGGGCGTGGGCAAGACCACCACGATCCTGTGCCTGGCGCGCGCGCTGCTA 83044 Query 1573953 GGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGAC 1574012 || || || | ||| ||||||||||| |||||||| || |||| |||||| ||||| Sbjct 83045 GGGGCCTCCTTCCGCGACGCCGTGCTCGAGCTCAACGCCTCCAACGACCGCGGCATCGAC 83104 Query 1574013 GTCGTGCGCAAGATCATCAAG 1574033 ||||||||||| | |||||| Sbjct 83105 GTCGTGCGCAACAAGATCAAG 83125 >seq65 Length=1244346 Score = 104 bits (114), Expect = 3e-16 Identities = 131/178 (74%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 869194 GATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 869253 ||||| ||| ||||| |||| || ||||||||||| || | ||| || ||||| ||||| Sbjct 631682 GATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCTTTTTAAGCCAGAAGAT 631623 Query 869254 GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTC 869313 || ||||||||| ||||| ||||||||||| || || || || | | | | || Sbjct 631622 GGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGAATGCTACTATTCTTTC 631563 Query 869314 GGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 | || ||| | || | | | || |||||||| |||||||||||| ||||| ||| Sbjct 631562 ACCGAA--TGTTGCGGTCTTGC-TGCCGATCCACTGCATCGCCCAGTCAGCCTTCTTC 631508 >seq19 Length=1842862 Score = 91.5 bits (100), Expect = 2e-12 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||| | || || |||||||| | ||||| || ||| | || || || || Sbjct 529556 AGAAGAGGACAGATGACATCTCCTCATGGGATGCTGATTTTCTGAAAGTGGATCAAGGCA 529497 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || |||||| | || || || || |||||| | ||||| || | | ||| | Sbjct 529496 CTCTGTTTGAGCTCATTCTAGCAGCTAACTACTTAGACATAAAAGGGTTATTGGATGTCA 529437 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| |||| || |||||||||||||||||| | || ||||| || || ||||||| Sbjct 529436 CATGCAAGACTGTCGCTAACATGATCAAGGGCAAGACACCTGAGGAAATTCGTAAGACCT 529377 Query 1592286 TTAACATCAA 1592295 | |||||||| Sbjct 529376 TCAACATCAA 529367 >seq236 Length=545527 Score = 89.7 bits (98), Expect = 6e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1726685 TGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCCACGCTCCCGTCGGTGCCG 1726744 |||||| |||| || ||||||| ||||| || |||||||||| ||| || ||||| ||| Sbjct 5544 TGCGGCAGGGCAGCCGCGCGCATGGCGTTGATCGCCGTCGCCAGGCTGCCATCGGTACCG 5485 Query 1726745 TTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTG 1726791 || || || || | | || || ||| | ||||||||||||||||| Sbjct 5484 TTTTTAAAACCAACCGGCATCGACAGGCCAGACGCCATCTCGCGGTG 5438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106991975958698