Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq382 188 6e-43 seq456 179 3e-40 seq1030 96.9 3e-15 seq176 82.4 6e-11 >seq382 Length=321670 Score = 188 bits (208), Expect = 6e-43 Identities = 141/164 (86%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || ||||| ||||| || || | ||| |||||||||| ||||| |||||||||||| Sbjct 64232 GCGGGGCGTCCCAGCGCTTTAGCCACCTCGAGCATGTTGACAATGACGGTCTTGATGCCG 64173 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 |||||||| || || ||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 64172 TTGCCCTTGCCCTCCACCTTGGCGCAGATGCGGGGCATCTTGTAGCGGTAGAACGCGTCG 64113 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGT 34655 ||||| |||||||| |||||||| | |||||| |||| |||||| Sbjct 64112 GCCACGTTGCGGTTCACGTTCACGGACCCCATTGTGG-TGGTGT 64070 Score = 132 bits (146), Expect = 4e-26 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 || || |||| |||||| | ||| ||| ||||||| ||||||||||||||| || ||| Sbjct 64886 CCGTCGAGCAAGTCCTGGAGCTTGGCGGGGTCGTGGCTGCCGTTGACGATGAAGCGCTCG 64827 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486 || ||| | |||| |||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 64826 TTCTTGAAGTCGAACTGCGTCTGCGCGCCCAGCTCGCACCCGAAGTACTTCGTCGGGT 64769 Score = 122 bits (134), Expect = 7e-23 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 33631 agcgcggcccgctgcgcgcgcagatcgccgcgcgtaaactgcagcagcagcgcgcggtac 33690 || |||||||||||||||||| |||||| |||| || |||| ||||| ||||||| | Sbjct 73604 AGGGCGGCCCGCTGCGCGCGCGCGTCGCCGTGCGTGAAGCGCAGTAGCAGGGCGCGGTGC 73545 Query 33691 ttgcgcACGTCCCCGGCGAACGCCGCCGGCCTCACCAGCACCTCGAACAGCACCAGCGGC 33750 |||||||||||| | |||| ||| || | ||||| | |||||| || || |||||| Sbjct 73544 TTGCGCACGTCCGCCGCGATGGCCAAAGGGCGGACCAGGATCTCGAATAGGACGAGCGGC 73485 Query 33751 GCCTTCGACTTCACCTCCAGTC 33772 ||||| || || || ||||||| Sbjct 73484 GCCTTGGATTTTACTTCCAGTC 73463 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 34280 CCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTCTCCGGGTTGTCACATT 34339 ||||| |||| |||| ||||| ||||||||||||||| |||||||||||||| || | Sbjct 65079 CCTGAGAGATGGTGTTGCGTTTAGTGGACACGATGAGCTCCGTCTCCGGGTTGTCGCACT 65020 Query 34340 CCGGACACAACACAAACTTGCGGATGAA 34367 | ||||| | || |||||||||||||| Sbjct 65019 CTGGACAGAGGACGAACTTGCGGATGAA 64992 >seq456 Length=250722 Score = 179 bits (198), Expect = 3e-40 Identities = 134/157 (85%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || ||||| ||||| || || | ||| |||||||||| ||||| |||||||||||| Sbjct 91257 GCGGGGCGTCCCAGCGCTTTAGCCACCTCGAGCATGTTGACAATGACGGTCTTGATGCCG 91316 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 |||||||| || || ||||||||||||||||| ||||| ||||||||||||||||| || Sbjct 91317 TTGCCCTTGCCCTCCACCTTGGCGCAGATGCGGGGCATCTTGTAGCGGTAGAACGCATCG 91376 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGG 34648 ||||| |||||||| |||||||| | |||||| |||| Sbjct 91377 GCCACGTTGCGGTTCACGTTCACGGACCCCATTGTGG 91413 Score = 132 bits (146), Expect = 4e-26 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 ||||| |||| |||||| | || ||| ||||||| ||||||||||||||| || ||| Sbjct 90635 CCATCGAGCAAGTCCTGCAGTTTGGCGGGGTCGTGGCTGCCGTTGACGATGAAGCGCTCG 90694 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486 || ||| | |||| |||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 90695 TTCTTGAAGTCGAACTGCGTCTGCGCGCCCAGCTCGCACCCGAAGTACTTCGTCGGGT 90752 Score = 116 bits (128), Expect = 3e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 33631 agcgcggcccgctgcgcgcgcagatcgccgcgcgtaaactgcagcagcagcgcgcggtac 33690 || |||||||||||||||||| || ||| |||| || |||| |||| |||||||| | Sbjct 86797 AGGGCGGCCCGCTGCGCGCGCGCGTCTCCGTGCGTGAAGCGCAGTAGCAACGCGCGGTGC 86856 Query 33691 ttgcgcACGTCCCCGGCGAACGCCGCCGGCCTCACCAGCACCTCGAACAGCACCAGCGGC 33750 |||||||||||| | |||| || || | ||||| | |||||| || || |||||| Sbjct 86857 TTGCGCACGTCCGCCGCGATGGCTAAAGGGCGGACCAGGATCTCGAATAGGACGAGCGGC 86916 Query 33751 GCCTTCGACTTCACCTCCAGTC 33772 ||||| || ||||| ||||||| Sbjct 86917 GCCTTGGATTTCACTTCCAGTC 86938 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 ||||||||| ||||||||||||||||||||||| || ||||| ||| ||||| || Sbjct 89708 CGGCGGGTTCTTCAGTATGAAGGTGTTGAGCTTGTGGCTGAAGTCCAGCAGCCCGTGGTA 89767 Query 34263 ACCGCATGCTTTGCAGCCCTG 34283 ||||| || ||||||||||| Sbjct 89768 GCCGCACGCCTTGCAGCCCTG 89788 >seq1030 Length=27445 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || || || | || ||||| ||||| ||| | || |||| || Sbjct 2903 AATATGCAGATCTTCGTGAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAGGCT 2844 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | || ||| ||||| ||||| || || | ||| ||| Sbjct 2843 TCCGACACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGAC 2784 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || |||| || | || ||||||||||||||||||| | | || || | || ||| Sbjct 2783 CAGCAGCGACTGATCTTCGCTGGTAAACAGCTGGAGGATGGCCGTACCCTGTCCGACTAC 2724 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 ||||| || || |||||||| | ||| ||||||| || || |||| || || Sbjct 2723 AACATCCAGAAGGAATCTACCCTTCACTTGGTGTTGAGGCTTAGAGGAGGTAA 2671 >seq176 Length=676275 Score = 82.4 bits (90), Expect = 6e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 94119 GCTTCTTCTGGCCCATGCGGTGGATGCGGTCCTGCGCCTGCAGCTCGATCTGCGGGTTCC 94178 ||||| ||| |||| ||||| || ||||||||||||||| |||| | ||||||||||| Sbjct 84262 GCTTCCGCTGCCCCACGCGGTATATACGGTCCTGCGCCTGCTGCTCCAGCTGCGGGTTCC 84321 Query 94179 AATGCGGCTCCAACATAATTATGTGATTGCCGCCGGTTAAATTTAATCCCACGCCGCC 94236 | ||||| |||| || | | ||| ||| ||||| | || | || |||||||| Sbjct 84322 AGTGCGGGTCCAGCAGCAGCAGGTGGTTGGCGCCGCACAGGTTCAGACCGACGCCGCC 84379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412832573476442