Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq382 188 6e-43
seq456 179 3e-40
seq1030 96.9 3e-15
seq176 82.4 6e-11
>seq382
Length=321670
Score = 188 bits (208), Expect = 6e-43
Identities = 141/164 (86%), Gaps = 1/164 (1%)
Strand=Plus/Minus
Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551
|| || ||||| ||||| || || | ||| |||||||||| ||||| ||||||||||||
Sbjct 64232 GCGGGGCGTCCCAGCGCTTTAGCCACCTCGAGCATGTTGACAATGACGGTCTTGATGCCG 64173
Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611
|||||||| || || ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 64172 TTGCCCTTGCCCTCCACCTTGGCGCAGATGCGGGGCATCTTGTAGCGGTAGAACGCGTCG 64113
Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGT 34655
||||| |||||||| |||||||| | |||||| |||| ||||||
Sbjct 64112 GCCACGTTGCGGTTCACGTTCACGGACCCCATTGTGG-TGGTGT 64070
Score = 132 bits (146), Expect = 4e-26
Identities = 100/118 (85%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428
|| || |||| |||||| | ||| ||| ||||||| ||||||||||||||| || |||
Sbjct 64886 CCGTCGAGCAAGTCCTGGAGCTTGGCGGGGTCGTGGCTGCCGTTGACGATGAAGCGCTCG 64827
Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486
|| ||| | |||| |||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 64826 TTCTTGAAGTCGAACTGCGTCTGCGCGCCCAGCTCGCACCCGAAGTACTTCGTCGGGT 64769
Score = 122 bits (134), Expect = 7e-23
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 33631 agcgcggcccgctgcgcgcgcagatcgccgcgcgtaaactgcagcagcagcgcgcggtac 33690
|| |||||||||||||||||| |||||| |||| || |||| ||||| ||||||| |
Sbjct 73604 AGGGCGGCCCGCTGCGCGCGCGCGTCGCCGTGCGTGAAGCGCAGTAGCAGGGCGCGGTGC 73545
Query 33691 ttgcgcACGTCCCCGGCGAACGCCGCCGGCCTCACCAGCACCTCGAACAGCACCAGCGGC 33750
|||||||||||| | |||| ||| || | ||||| | |||||| || || ||||||
Sbjct 73544 TTGCGCACGTCCGCCGCGATGGCCAAAGGGCGGACCAGGATCTCGAATAGGACGAGCGGC 73485
Query 33751 GCCTTCGACTTCACCTCCAGTC 33772
||||| || || || |||||||
Sbjct 73484 GCCTTGGATTTTACTTCCAGTC 73463
Score = 91.5 bits (100), Expect = 1e-13
Identities = 73/88 (83%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 34280 CCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTCTCCGGGTTGTCACATT 34339
||||| |||| |||| ||||| ||||||||||||||| |||||||||||||| || |
Sbjct 65079 CCTGAGAGATGGTGTTGCGTTTAGTGGACACGATGAGCTCCGTCTCCGGGTTGTCGCACT 65020
Query 34340 CCGGACACAACACAAACTTGCGGATGAA 34367
| ||||| | || ||||||||||||||
Sbjct 65019 CTGGACAGAGGACGAACTTGCGGATGAA 64992
>seq456
Length=250722
Score = 179 bits (198), Expect = 3e-40
Identities = 134/157 (85%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551
|| || ||||| ||||| || || | ||| |||||||||| ||||| ||||||||||||
Sbjct 91257 GCGGGGCGTCCCAGCGCTTTAGCCACCTCGAGCATGTTGACAATGACGGTCTTGATGCCG 91316
Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611
|||||||| || || ||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 91317 TTGCCCTTGCCCTCCACCTTGGCGCAGATGCGGGGCATCTTGTAGCGGTAGAACGCATCG 91376
Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGG 34648
||||| |||||||| |||||||| | |||||| ||||
Sbjct 91377 GCCACGTTGCGGTTCACGTTCACGGACCCCATTGTGG 91413
Score = 132 bits (146), Expect = 4e-26
Identities = 100/118 (85%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428
||||| |||| |||||| | || ||| ||||||| ||||||||||||||| || |||
Sbjct 90635 CCATCGAGCAAGTCCTGCAGTTTGGCGGGGTCGTGGCTGCCGTTGACGATGAAGCGCTCG 90694
Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486
|| ||| | |||| |||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 90695 TTCTTGAAGTCGAACTGCGTCTGCGCGCCCAGCTCGCACCCGAAGTACTTCGTCGGGT 90752
Score = 116 bits (128), Expect = 3e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 33631 agcgcggcccgctgcgcgcgcagatcgccgcgcgtaaactgcagcagcagcgcgcggtac 33690
|| |||||||||||||||||| || ||| |||| || |||| |||| |||||||| |
Sbjct 86797 AGGGCGGCCCGCTGCGCGCGCGCGTCTCCGTGCGTGAAGCGCAGTAGCAACGCGCGGTGC 86856
Query 33691 ttgcgcACGTCCCCGGCGAACGCCGCCGGCCTCACCAGCACCTCGAACAGCACCAGCGGC 33750
|||||||||||| | |||| || || | ||||| | |||||| || || ||||||
Sbjct 86857 TTGCGCACGTCCGCCGCGATGGCTAAAGGGCGGACCAGGATCTCGAATAGGACGAGCGGC 86916
Query 33751 GCCTTCGACTTCACCTCCAGTC 33772
||||| || ||||| |||||||
Sbjct 86917 GCCTTGGATTTCACTTCCAGTC 86938
Score = 84.2 bits (92), Expect = 2e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262
||||||||| ||||||||||||||||||||||| || ||||| ||| ||||| ||
Sbjct 89708 CGGCGGGTTCTTCAGTATGAAGGTGTTGAGCTTGTGGCTGAAGTCCAGCAGCCCGTGGTA 89767
Query 34263 ACCGCATGCTTTGCAGCCCTG 34283
||||| || |||||||||||
Sbjct 89768 GCCGCACGCCTTGCAGCCCTG 89788
>seq1030
Length=27445
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|| ||||| || || || || || | || ||||| ||||| ||| | || |||| ||
Sbjct 2903 AATATGCAGATCTTCGTGAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAGGCT 2844
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || ||| | || ||| ||||| ||||| || || | ||| |||
Sbjct 2843 TCCGACACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGAC 2784
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || |||| || | || ||||||||||||||||||| | | || || | || |||
Sbjct 2783 CAGCAGCGACTGATCTTCGCTGGTAAACAGCTGGAGGATGGCCGTACCCTGTCCGACTAC 2724
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502
||||| || || |||||||| | ||| ||||||| || || |||| || ||
Sbjct 2723 AACATCCAGAAGGAATCTACCCTTCACTTGGTGTTGAGGCTTAGAGGAGGTAA 2671
>seq176
Length=676275
Score = 82.4 bits (90), Expect = 6e-11
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 94119 GCTTCTTCTGGCCCATGCGGTGGATGCGGTCCTGCGCCTGCAGCTCGATCTGCGGGTTCC 94178
||||| ||| |||| ||||| || ||||||||||||||| |||| | |||||||||||
Sbjct 84262 GCTTCCGCTGCCCCACGCGGTATATACGGTCCTGCGCCTGCTGCTCCAGCTGCGGGTTCC 84321
Query 94179 AATGCGGCTCCAACATAATTATGTGATTGCCGCCGGTTAAATTTAATCCCACGCCGCC 94236
| ||||| |||| || | | ||| ||| ||||| | || | || ||||||||
Sbjct 84322 AGTGCGGGTCCAGCAGCAGCAGGTGGTTGGCGCCGCACAGGTTCAGACCGACGCCGCC 84379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412832573476442
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |