Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq216 154 2e-31 seq215 154 2e-31 seq666 140 5e-27 seq486 129 9e-24 seq236 114 2e-19 seq203 109 9e-18 seq65 98.7 2e-14 seq3 87.8 3e-11 seq27 86.0 1e-10 >seq216 Length=582351 Score = 154 bits (170), Expect = 2e-31 Identities = 181/243 (74%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || |||||||||| |||| || || ||| ||| Sbjct 33735 TGTACTTGGTGACCGCCTTGGTACCTTCACTGACGGCGTGCTTGGCGAGCTCACCGGGCA 33676 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | ||||| |||||| | ||| | || | |||||| |||||||| ||| Sbjct 33675 GCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGAGGTGATCGTCGAACGCTTGTTGTAGT 33616 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| | | | | || || | | |||| || |||| |||||||| || |||||||| Sbjct 33615 GGGCGAGACGAGAC--GCTTCCGCGGCGATACGCTCGAAGATGTCGTTCACGAACGAGTT 33558 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | || |||||| || ||||||||| |||||||| | |||||| Sbjct 33557 CATGATTGACATGGCCTTCGAGGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTT 33498 Query 1485708 GTA 1485710 ||| Sbjct 33497 GTA 33495 Score = 154 bits (170), Expect = 2e-31 Identities = 181/243 (74%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || |||||||||| |||| || || ||| ||| Sbjct 48280 TGTACTTGGTGACCGCCTTGGTACCTTCACTGACGGCGTGCTTGGCGAGCTCACCGGGCA 48221 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | ||||| |||||| | ||| | || | |||||| |||||||| ||| Sbjct 48220 GCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGAGGTGATCGTCGAACGCTTGTTGTAGT 48161 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| | | | | || || | | |||| || |||| |||||||| || |||||||| Sbjct 48160 GGGCGAGACGAGAC--GCTTCCGCGGCGATACGCTCGAAGATGTCGTTCACGAACGAGTT 48103 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | || |||||| || ||||||||| |||||||| | |||||| Sbjct 48102 CATGATTGACATGGCCTTCGAGGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTT 48043 Query 1485708 GTA 1485710 ||| Sbjct 48042 GTA 48040 >seq215 Length=584702 Score = 154 bits (170), Expect = 2e-31 Identities = 181/243 (74%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || |||||||||| |||| || || ||| ||| Sbjct 546906 TGTACTTGGTGACCGCCTTGGTACCTTCACTGACGGCGTGCTTGGCGAGCTCACCGGGCA 546847 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | ||||| |||||| | ||| | || | |||||| |||||||| ||| Sbjct 546846 GCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGAGGTGATCGTCGAACGCTTGTTGTAGT 546787 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| | | | | || || | | |||| || |||| |||||||| || |||||||| Sbjct 546786 GGGCGAGACGAGAC--GCTTCCGCGGCGATACGCTCGAAGATGTCGTTCACGAACGAGTT 546729 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | || |||||| || ||||||||| |||||||| | |||||| Sbjct 546728 CATGATTGACATGGCCTTCGAGGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTT 546669 Query 1485708 GTA 1485710 ||| Sbjct 546668 GTA 546666 Score = 154 bits (170), Expect = 2e-31 Identities = 181/243 (74%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || |||||||||| |||| || || ||| ||| Sbjct 556400 TGTACTTGGTGACCGCCTTGGTACCTTCACTGACGGCGTGCTTGGCGAGCTCACCGGGCA 556341 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | ||||| |||||| | ||| | || | |||||| |||||||| ||| Sbjct 556340 GCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGAGGTGATCGTCGAACGCTTGTTGTAGT 556281 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| | | | | || || | | |||| || |||| |||||||| || |||||||| Sbjct 556280 GGGCGAGACGAGAC--GCTTCCGCGGCGATACGCTCGAAGATGTCGTTCACGAACGAGTT 556223 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | || |||||| || ||||||||| |||||||| | |||||| Sbjct 556222 CATGATTGACATGGCCTTCGAGGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTT 556163 Query 1485708 GTA 1485710 ||| Sbjct 556162 GTA 556160 >seq666 Length=109244 Score = 140 bits (154), Expect = 5e-27 Identities = 191/263 (73%), Gaps = 8/263 (3%) Strand=Plus/Minus Query 2018912 CCTCCCGTGGATCGAAAAGTACCGCCCGACAGT-GCTCGACGACATCGTGGGCAACGAGC 2018970 |||||| |||||||| |||||||| ||| ||| | || ||||||||||||||||||| Sbjct 36503 CCTCCCATGGATCGAGAAGTACCGGCCG-CAGACGTTCAGCGACATCGTGGGCAACGAGG 36445 Query 2018971 ACGCCGTTGCCTACCTCAAGGCGCTGGCCGCCGAC---GGCAACATGCCCAACCTCTTGC 2019027 || | || | || ||| || |||| | |||||| ||||||| | | Sbjct 36444 ACACGGTGTCGCGGCT---GGCCGTGTTCGCCAAGTCGGGCAACGCGCCCAACGTGATCA 36388 Query 2019028 TGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCT 2019087 | ||||||||||| ||| |||||||||||| | ||| |||||||||||||| || Sbjct 36387 TCGCGGGCCCGCCGGGCGTGGGCAAGACCACCACGATCCTGTGCCTGGCGCGCGCCCTGC 36328 Query 2019088 TGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGG 2019147 | || || || | ||| ||||||||||| ||||| || || |||| |||||| | | Sbjct 36327 TAGGGGCCTCCTTCCGCGACGCCGTGCTCGAGCTCAACGCCTCCAACGACCGCGGCATCG 36268 Query 2019148 ACGTCGTGCGTAGAATCATCAAG 2019170 |||||||||| | | |||||| Sbjct 36267 ACGTCGTGCGCAACAAGATCAAG 36245 >seq486 Length=217039 Score = 129 bits (142), Expect = 9e-24 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || ||||||||||||| ||| | ||||| ||||||||||| || ||||| Sbjct 176150 GCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGCCCGTT 176209 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| ||||||| |||||||| | ||||| ||| || | | || | || Sbjct 176210 GGAGACGCCGTTCGTGCCCGCGATGTAGGTGCCTTTCGCTCTGATGCAATGAACATGAAC 176269 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 || |||||||| || | ||||| || | || |||| ||||| || |||||||| || Sbjct 176270 TCCTATGCCGCCCGCGGATTTGGATATTAATGCACACTGCTTCAGAGTGTCGTAGATACC 176329 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||||| |||| |||||||| | | || || || || ||| || ||||| | || Sbjct 176330 TTCGATGCTGTCGTCCTTCATGGCGATGAGGAAACATGAGGAGAGCTGAGGGCGGGGGGT 176389 Query 2073777 GCCGGCATTGAAGAGCGTGGG 2073797 | |||| ||| || ||||| Sbjct 176390 GGCGGCCGAGAACAGGGTGGG 176410 >seq236 Length=545527 Score = 114 bits (126), Expect = 2e-19 Identities = 165/226 (73%), Gaps = 14/226 (6%) Strand=Plus/Minus Query 2174945 GCCCCGCAGCACAATGTGACCGTCGGGGTTGCCAGTGCTGCG---GCAGGCGGCAGCGC- 2175000 ||| ||||| | | ||| ||||| |||||||| ||||| ||||| ||||| | Sbjct 5629 GCCGCGCAGGATCACGTGCCCGTCCGGGTTGCC----CTGCGTTTGCAGGAGGCAGACCT 5574 Query 2175001 GACCGTCGCC--GTCGATCCAGA-GAAAGGTGTGTGGCTGCGCGGCGGTGCGCACGGCAT 2175057 | || |||| || ||| | || |||| | ||| ||| | || || | ||||| ||| | Sbjct 5573 GGCC--CGCCTGGTTGATACCGACGAAACG-GTGCGGCAGGGCAGCCGCGCGCATGGCGT 5517 Query 2175058 CGAGCGCCGTTGCCACGCTGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCG 2175117 || |||||| |||| |||||| ||||| ||||||||||| || ||||||| || ||| Sbjct 5516 TGATCGCCGTCGCCAGGCTGCCATCGGTACCGTTTTTAAAACCAACCGGCATCGACAGGC 5457 Query 2175118 CCGACGCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGCGCGCGCC 2175163 | |||||||| |||||||| || || ||||| |||||||| Sbjct 5456 CAGACGCCATCTCGCGGTGGGTTTGCGATTCCGTGGTACGCGCGCC 5411 >seq203 Length=607560 Score = 109 bits (120), Expect = 9e-18 Identities = 197/284 (69%), Gaps = 32/284 (11%) Strand=Plus/Plus Query 2018912 CCTCCCGTGGATCGAAAAGTACCGCCCGACAGT-GCTCGACGACATCGTGGGCAACGAGC 2018970 ||| || |||||||| |||||||| ||| ||| | || ||||||||||||||||||| Sbjct 82849 CCTTCCATGGATCGAGAAGTACCGGCCG-CAGACGTTCAGCGACATCGTGGGCAACGAGG 82907 Query 2018971 AC---------------GCCG---TTGCCTACCTC----AAGGCGCTGGCC--GCCGACG 2019006 || |||| ||||| || || || |||| || || | | Sbjct 82908 ACACGGTGTCGCGGCTGGCCGGGTTTGCC-ACGTCGGGGAAAGCGC---CCAAGCGG--G 82961 Query 2019007 GCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATCG 2019066 | ||| ||||| | | | | ||||||||||| ||| |||||||||||| | ||| Sbjct 82962 GGAACGCGCCCAGCGTGATCATCGCGGGCCCGCCGGGCGTGGGCAAGACCACCACGATCC 83021 Query 2019067 CGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATG 2019126 |||||||||||||| ||| | || || || | ||| ||||||||||| ||||| | Sbjct 83022 TGTGCCTGGCGCGCGCGCTGCTAGGGGCCTCCTTCCGCGACGCCGTGCTCGAGCTCAACG 83081 Query 2019127 CGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATCAAG 2019170 | || |||| |||||| | ||||||||||| | | |||||| Sbjct 83082 CCTCCAACGACCGCGGCATCGACGTCGTGCGCAACAAGATCAAG 83125 >seq65 Length=1244346 Score = 98.7 bits (108), Expect = 2e-14 Identities = 137/191 (72%), Gaps = 7/191 (4%) Strand=Plus/Minus Query 794355 GATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414 ||||||||| ||||| ||| || ||||||||||| || | ||| || ||||| ||||| Sbjct 631682 GATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCTTTTTAAGCCAGAAGAT 631623 Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 || ||||||||| ||||| ||||||||||| || || || || | || | | || Sbjct 631622 GGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGAATGCTACTATTCTTTC 631563 Query 794475 GGCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCCCACTCTGCCTTTTTC 794532 | || || || |||| || |||||||| ||||||||| || ||||| ||| Sbjct 631562 ACCGAATGT-----TGCGGTCTTGCTGCCGATCCACTGCATCGCCCAGTCAGCCTTCTTC 631508 Query 794533 CTCACCGAGGG 794543 | || |||| Sbjct 631507 TTTACACAGGG 631497 >seq3 Length=2764502 Score = 87.8 bits (96), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 1812783 TGCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGAT 1812842 ||||||||||||||||| ||| ||||| | || ||||| | |||||||||||||||| Sbjct 713128 TGCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGAT 713187 Query 1812843 CCTCACCCGAGGTATATC 1812860 ||||||||| || ||||| Sbjct 713188 CCTCACCCGGGGCATATC 713205 >seq27 Length=1723060 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 712996 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 712937 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 712936 CTCACCCGGGGCATATC 712920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916055564037566