Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq119 109 4e-19
seq1030 100 2e-16
seq637 93.3 3e-14
seq176 87.8 1e-12
>seq119
Length=877449
Score = 109 bits (120), Expect = 4e-19
Identities = 105/135 (78%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 105086 GCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGA 105145
||||||||| ||| | ||||||||||| || | || |||||||||||| ||||||||||
Sbjct 424266 GCACGGCTTCCACATCCACGAGTTCGGGGACAACACCAACGGCTGCACCTCCGCCGGCGC 424325
Query 105146 GCACTTCAACCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205
|||||||||||| || || | |||||||| || || ||| | | || |||||
Sbjct 424326 GCACTTCAACCCGCTGCAGCAGACGCACGGCGCGCCCAGCGACGCCGTCCGCCATGTCGG 424385
Query 105206 CGACCTGGGCAATGT 105220
||| ||||||||||
Sbjct 424386 GGACTTGGGCAATGT 424400
>seq1030
Length=27445
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|| ||||| || || || || || | || ||||| ||||| ||| | || |||||||
Sbjct 2903 AATATGCAGATCTTCGTGAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAGGCT 2844
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||| || ||| | || ||| ||||| || || || || | ||| |||
Sbjct 2843 TCCGACACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGAC 2784
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|||||| |||| || | || ||||||||||||||||| | | || || | ||||||
Sbjct 2783 CAGCAGCGACTGATCTTCGCTGGTAAACAGCTGGAGGATGGCCGTACCCTGTCCGACTAC 2724
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770
||||| || ||||| ||||| | ||| ||||||||||
Sbjct 2723 AACATCCAGAAGGAATCTACCCTTCACTTGGTGTTGAG 2686
>seq637
Length=122170
Score = 93.3 bits (102), Expect = 3e-14
Identities = 281/432 (65%), Gaps = 4/432 (1%)
Strand=Plus/Plus
Query 29617 TGCGCGCAATGATGGACGAGTTACAATTGCAAACGGGCAAAACGTACGAGTTGACAAGCG 29676
||||||| ||| || ||||| | || || ||| || || ||| |||| ||||
Sbjct 59962 TGCGCGCGATGCTGAACGAGCTGTCTGCCCAGACTGGCCGTACCTATGAGCTGACCAGCG 60021
Query 29677 CAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGCAAAAGTTTC 29736
||||| || | || | || ||||||| | || | ||| | |||| || ||| |
Sbjct 60022 CAATCGGTGCGGGTAAAGATAAGATTGAAGACGTGGACTACACCACTGCTCAGCAGTACC 60081
Query 29737 TCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACACCGATTTGG 29796
|||| | || ||||| ||||||||||| || | |||| ||| |||||||| |||
Sbjct 60082 TCGACCACATCTTCCTGATGAGCTACGACTTCTACGGCGGCTGGAGCAACACCGAGCTGG 60141
Query 29797 GCTACCAAACTACTCTCTACGCGCCGAGTTG--GAACCCAAACGAACTGTACAACACGGA 29854
|| |||| || | || | ||||| || || | | || ||| |||| ||||||
Sbjct 60142 GCCACCAGGCTGCGCTGCATGCGCCAGCATGGCGACCAGACACCAAC--TACACCACGGA 60199
Query 29855 CCACGCCGTTAAGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAATTATTGTGGGCGT 29914
||| ||| | || | | || ||||| | || |||| || | || || |
Sbjct 60200 AAACGGGGTTGATGCCCTGCTGCAGCAAGGCGTACAGCCTGGCAAGATCGTGGTCGGTGC 60259
Query 29915 CGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGGTGACAACTATTTTAC 29974
| |||||| |||||||| ||||| || || || || |||| |||| || ||
Sbjct 60260 GGGCATGTATGGCCGCGGCTGGACGGGGGTACACGGCTACACCGGTAACAATCCGTTCAC 60319
Query 29975 GGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGCGTTGTCGACTATCGCCA 30034
|| || || | || |||| || || |||||| ||||| || |||||||| ||
Sbjct 60320 CGGTACCGCGACCGGTATGGTGAGAGGTACCTGGGAACCGGGCGTGGTTGACTATCGTCA 60379
Query 30035 AATTGAAAACGA 30046
|| | |||||
Sbjct 60380 GATCGTTAACGA 60391
>seq176
Length=676275
Score = 87.8 bits (96), Expect = 1e-12
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 94233 GCTTCTTTTGGCCCATGCGATGAATACGGTCTTGCGCCTGCAGCTCGATCTGCGGGTTCC 94292
||||| || |||| ||| | |||||||| ||||||||| |||| | |||||||||||
Sbjct 84262 GCTTCCGCTGCCCCACGCGGTATATACGGTCCTGCGCCTGCTGCTCCAGCTGCGGGTTCC 84321
Query 94293 AGTGGGGCTCCAGCATAATAATGTGATTGCCGCCGGTTAGGTTTAACCCCACGCCGCC 94350
|||| || ||||||| | | ||| ||| ||||| ||||| | || ||||||||
Sbjct 84322 AGTGCGGGTCCAGCAGCAGCAGGTGGTTGGCGCCGCACAGGTTCAGACCGACGCCGCC 84379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398868078808066
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |