Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq119 109 4e-19 seq1030 100 2e-16 seq637 93.3 3e-14 seq176 87.8 1e-12 >seq119 Length=877449 Score = 109 bits (120), Expect = 4e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 105086 GCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGA 105145 ||||||||| ||| | ||||||||||| || | || |||||||||||| |||||||||| Sbjct 424266 GCACGGCTTCCACATCCACGAGTTCGGGGACAACACCAACGGCTGCACCTCCGCCGGCGC 424325 Query 105146 GCACTTCAACCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 |||||||||||| || || | |||||||| || || ||| | | || ||||| Sbjct 424326 GCACTTCAACCCGCTGCAGCAGACGCACGGCGCGCCCAGCGACGCCGTCCGCCATGTCGG 424385 Query 105206 CGACCTGGGCAATGT 105220 ||| |||||||||| Sbjct 424386 GGACTTGGGCAATGT 424400 >seq1030 Length=27445 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || || || | || ||||| ||||| ||| | || ||||||| Sbjct 2903 AATATGCAGATCTTCGTGAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAGGCT 2844 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | || ||| ||||| || || || || | ||| ||| Sbjct 2843 TCCGACACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGAC 2784 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| |||| || | || ||||||||||||||||| | | || || | |||||| Sbjct 2783 CAGCAGCGACTGATCTTCGCTGGTAAACAGCTGGAGGATGGCCGTACCCTGTCCGACTAC 2724 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||||| || ||||| ||||| | ||| |||||||||| Sbjct 2723 AACATCCAGAAGGAATCTACCCTTCACTTGGTGTTGAG 2686 >seq637 Length=122170 Score = 93.3 bits (102), Expect = 3e-14 Identities = 281/432 (65%), Gaps = 4/432 (1%) Strand=Plus/Plus Query 29617 TGCGCGCAATGATGGACGAGTTACAATTGCAAACGGGCAAAACGTACGAGTTGACAAGCG 29676 ||||||| ||| || ||||| | || || ||| || || ||| |||| |||| Sbjct 59962 TGCGCGCGATGCTGAACGAGCTGTCTGCCCAGACTGGCCGTACCTATGAGCTGACCAGCG 60021 Query 29677 CAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGCAAAAGTTTC 29736 ||||| || | || | || ||||||| | || | ||| | |||| || ||| | Sbjct 60022 CAATCGGTGCGGGTAAAGATAAGATTGAAGACGTGGACTACACCACTGCTCAGCAGTACC 60081 Query 29737 TCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACACCGATTTGG 29796 |||| | || ||||| ||||||||||| || | |||| ||| |||||||| ||| Sbjct 60082 TCGACCACATCTTCCTGATGAGCTACGACTTCTACGGCGGCTGGAGCAACACCGAGCTGG 60141 Query 29797 GCTACCAAACTACTCTCTACGCGCCGAGTTG--GAACCCAAACGAACTGTACAACACGGA 29854 || |||| || | || | ||||| || || | | || ||| |||| |||||| Sbjct 60142 GCCACCAGGCTGCGCTGCATGCGCCAGCATGGCGACCAGACACCAAC--TACACCACGGA 60199 Query 29855 CCACGCCGTTAAGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAATTATTGTGGGCGT 29914 ||| ||| | || | | || ||||| | || |||| || | || || | Sbjct 60200 AAACGGGGTTGATGCCCTGCTGCAGCAAGGCGTACAGCCTGGCAAGATCGTGGTCGGTGC 60259 Query 29915 CGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGGTGACAACTATTTTAC 29974 | |||||| |||||||| ||||| || || || || |||| |||| || || Sbjct 60260 GGGCATGTATGGCCGCGGCTGGACGGGGGTACACGGCTACACCGGTAACAATCCGTTCAC 60319 Query 29975 GGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGCGTTGTCGACTATCGCCA 30034 || || || | || |||| || || |||||| ||||| || |||||||| || Sbjct 60320 CGGTACCGCGACCGGTATGGTGAGAGGTACCTGGGAACCGGGCGTGGTTGACTATCGTCA 60379 Query 30035 AATTGAAAACGA 30046 || | ||||| Sbjct 60380 GATCGTTAACGA 60391 >seq176 Length=676275 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 94233 GCTTCTTTTGGCCCATGCGATGAATACGGTCTTGCGCCTGCAGCTCGATCTGCGGGTTCC 94292 ||||| || |||| ||| | |||||||| ||||||||| |||| | ||||||||||| Sbjct 84262 GCTTCCGCTGCCCCACGCGGTATATACGGTCCTGCGCCTGCTGCTCCAGCTGCGGGTTCC 84321 Query 94293 AGTGGGGCTCCAGCATAATAATGTGATTGCCGCCGGTTAGGTTTAACCCCACGCCGCC 94350 |||| || ||||||| | | ||| ||| ||||| ||||| | || |||||||| Sbjct 84322 AGTGCGGGTCCAGCAGCAGCAGGTGGTTGGCGCCGCACAGGTTCAGACCGACGCCGCC 84379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398868078808066