Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq197 143 2e-29 >seq197 Length=620651 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||||| || | ||| || || |||||||| || ||||| || || | Sbjct 447162 CCTCCTCGCAGACGCAAAACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAC 447221 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || ||||| ||| | ||||| || ||||| || || ||| Sbjct 447222 AAGGTGCGGCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 447281 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || ||||||| | || | ||||| ||| ||| ||| Sbjct 447282 ATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCTGAAGCTTCAACT 447341 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || |||||||| | |||||| || || |||||||| Sbjct 447342 TCCAGAGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 447388 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||||||||| || || ||||| ||||| || ||||| || || | Sbjct 449338 CCACCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 449397 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | |||||||| ||| | ||||| || ||||| || || ||| Sbjct 449398 AGGGTGCGGCCATCCTCCAACTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 449457 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || || ||| | || | ||||| || ||| ||| Sbjct 449458 ATTCCCTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATTGTGTCTGAGGCTTCCACT 449517 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || |||||||| | |||||| || || |||||||| Sbjct 449518 TCCAGGGTAATTGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 449564 Score = 122 bits (134), Expect = 7e-23 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 29562 TCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAAT 29621 ||| | || ||||| || | ||| || || || || || |||||||| || || | | Sbjct 448365 TCCACGCAGACGCAAAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAA 448424 Query 29622 GGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAAT 29681 ||||||| ||| || || || ||||| || | ||||| || ||||| || || ||||| Sbjct 448425 GGTGCGACCATCCTCTAGCTGGTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAAT 448484 Query 29682 ACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTC 29741 |||||||||||||| | || ||||||| | || | |||| ||| ||| ||||| Sbjct 448485 TCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGATGTCTGAAGCTTCAACTTC 448544 Query 29742 AAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || | || || ||||| |||||||| Sbjct 448545 CAGAGTGATGGTCTTTCCCGTCAGAGTCTTGACAAAGATCTGCAT 448589 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||||||||| || || ||||| ||||| || ||||| || || | Sbjct 449566 CCACCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 449625 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || |||||||| | || | | ||||| || ||||| Sbjct 449626 AAGGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCGGG 449685 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | || || || | || | ||||| | | | || || Sbjct 449686 ATGCCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCTGCAGGCTCGACC 449745 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | ||| || ||||| ||||| | ||| || || ||||||||||| || Sbjct 449746 TCCAAAGTGATGGTTTTCCCAGTCAGGGTCTTCACGAATATCTGCATGTT 449795 Score = 105 bits (116), Expect = 5e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||||| ||||| ||||| ||||||||||| || ||||| || || | Sbjct 448591 CCTCCACGCAGACGCAATACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAT 448650 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || || |||||||| || | ||||| || ||||| || || ||| Sbjct 448651 AAGGTGCGACCATCCTCTAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 448710 Query 29680 ATACCCTCTTTGT 29692 || |||||||||| Sbjct 448711 ATTCCCTCTTTGT 448723 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| ||||| ||||| || ||||| ||||| || || | | ||||||| ||| || Sbjct 446268 ACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCC 446327 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || ||||| || || | || | | ||||| || || ||||||||||| ||||| || Sbjct 446328 AGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 446387 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || || ||| | || | ||||| ||| ||| ||||| ||||| || || || Sbjct 446388 ATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCAACTTCCAGAGTGATGGTCTTT 446447 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || | || || || || ||||||||| Sbjct 446448 CCCGTCAGAGTCTTCACGAAAATCTGCATT 446477 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 29641 TGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAAT 29700 |||||||| ||| | ||||| || ||||| || || ||||| |||||||||||||| | Sbjct 449191 TGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGGATC 449250 Query 29701 TTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCA 29760 || || ||| | || | ||||| || ||| ||||| || || || || |||||| Sbjct 449251 TTGGCCTTCACATTCTCAATTGTGTCTGAGGCTTCCACTTCCAGGGTAATTGTCTTGCCA 449310 Query 29761 GTTAAGGTTTTAACAAATATCTGCAT 29786 || | |||||| || || |||||||| Sbjct 449311 GTCAGGGTTTTCACGAAAATCTGCAT 449336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385210777422954