Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq974 131 3e-25 seq962 104 4e-17 >seq974 Length=31311 Score = 131 bits (144), Expect = 3e-25 Identities = 271/397 (68%), Gaps = 10/397 (3%) Strand=Plus/Minus Query 78628 TTCTACAATGCAGTTTCGACTCACAAACTTTCATTACCGACACCGATTATGGCAGGCGTT 78687 |||||| |||| || ||||| ||| |||| | || || || || ||| | ||||| Sbjct 392 TTCTACGATGCGGTATCGACGTTCAAGATTTCTCTGCCTACGCCAATCATGTCTGGCGTG 333 Query 78688 CGTACCCCGACACGCCAGTTTAGTTCGTGTGTTAAGATTGAATCAGGCGACTCTTTGCAT 78747 || ||||| || || ||||| || || || || ||| || | || ||| || || Sbjct 332 CGCACCCCAACCCGTCAGTTCAGCTCCTGCGTACTGATCGAGTGTGGTGACAGCCTGGAT 273 Query 78748 TCAATCAATGAAGTGGCTAAATCAATTGTAAGTTACATTAGTAAGCGTGCAGGTATCGGT 78807 || ||||| | | | | | || || | ||| || ||||||| |||||||| Sbjct 272 TCCATCAACGCCACGTCCAGCGCCATCGTGAAATACGTTTCCCAGCGTGCCGGTATCGGC 213 Query 78808 GTTAACGGCGGTGCGATTCGTGCTGAAGGGGCAGTCG--TTCGTTCAGGTGAG--ATTCG 78863 | |||| |||| || ||||| |||||| | |||| ||||| |||| Sbjct 212 ATCAACGCCGGTCGCATCCGTGCGCT--GGGCAGCCCGATTCGCGGCGGTGAAGCATTC- 156 Query 78864 TCACACTGG-TGTAATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTC 78922 ||||| || |||| | || |||| || ||||| || || ||||| ||||| || |||| Sbjct 155 -CACACCGGCTGTA-TCCCGTTCTATAAGCACTTCCAGACGGCGGTAAAATCCTGCTCTC 98 Query 78923 AAGGTGGTGTACGTGGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTG 78982 | || || || || || ||||||||||| || ||||| || |||||| | ||||| | Sbjct 97 AGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCTATGTGGCACCTGGAAGTGG 38 Query 78983 AAAAACTGTTAGTTCTGAAGAACAACAAAGGTGTTGA 79019 ||| ||| | || ||||| |||||| |||||||| Sbjct 37 AAAGCCTGCTGGTCCTGAAAAACAACCGTGGTGTTGA 1 >seq962 Length=32987 Score = 104 bits (114), Expect = 4e-17 Identities = 197/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 188168 TGGAAAGAACTGACGGGCTACGGTTTCAGTCTGTACAGTACACCAAGTGAATCGCTGTGT 188227 |||||||| || |||||||||||||| ||||||||||| ||||| || ||||| Sbjct 24492 TGGAAAGAGGAAACCGGCTACGGTTTCAGCCTGTACAGTACCCCAAGCGAGAACCTGTGC 24433 Query 188228 GATCGTTTCTGTCGTCTCGACCAAGAGAAATACGGTGTCATTACAGGTATCAATGACAAA 188287 || || ||||| ||||| ||| | | | ||| || | ||| | | || ||| Sbjct 24432 GACCGCTTCTGCCGTCTGGACACCGCCGAGTTCGGCATCGTGGAAGGCGTGACCGATAAA 24373 Query 188288 GACTATTACACAAACTCGTTTCACTTAGACGTGTTCAAGAAAGTTAACCCATTTGAGAAA 188347 | || ||||| ||| || ||| | |||||| ||||| || ||||| | || || Sbjct 24372 GGTTACTACACCAACAGCTTCCACCTCGACGTGGAGAAGAAGGTAAACCCGTACGACAAG 24313 Query 188348 ATTGATTTTGAAGCTGCATACCCAATTCATGCAAACGGTGGTTTCATCTGTTATGCTGAG 188407 || || |||||||| || || || || ||||| || |||||||| || | ||| Sbjct 24312 ATCGACTTTGAAGCGGCGTATCCGCCGATCGCCAACGGCGGCTTCATCTGCTACGGCGAG 24253 Query 188408 TTCCCGAATATGCGAGATAACATCAAAGGTCTAGAGCGCGTATGGGATTA 188457 | |||||| || | | ||| | || | || || ||| |||||||| Sbjct 24252 TACCCGAACATTCAGCACAACCTGAAGGCGCTGGAAGACGTGTGGGATTA 24203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790139080733760