Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_023574.1 Length=128546 Score E Sequences producing significant alignments: (Bits) Value seq1512 172 5e-38 >seq1512 Length=4801 Score = 172 bits (190), Expect = 5e-38 Identities = 133/154 (86%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 28233 CAATTAAAAGCAGAAATCAATAAAA-AATATCACTTAATGCTTGATaa-aaaaaTAATAT 28290 |||||||||| |||||| ||||||| ||||||| |||| |||| || | ||| | || Sbjct 110 CAATTAAAAGTAGAAATAAATAAAAAAATATCATCTAATATTTGACAACGATAATTA-AT 168 Query 28291 TTTGATATAATAATATGTATAGAAATAAAGGAGAACTAACACATGGTAGTTAAATTAACA 28350 |||| ||||||| ||| |||||||||||||||||||||||| |||||||| |||||||| Sbjct 169 TTTGGTATAATAGTATATATAGAAATAAAGGAGAACTAACAAATGGTAGTCAAATTAACG 228 Query 28351 CAAAAACAAGATGATTATCTTAAAACTTTTGGAA 28384 |||||||||| |||||||||| |||||||||||| Sbjct 229 CAAAAACAAGCTGATTATCTTGAAACTTTTGGAA 262 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/225 (70%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 28507 AAAATGCTAAATGCTCTAATTAACGGTTATGAAGTTGATGAACCTAAATATAAATTTTAT 28566 |||||| | | ||| | |||||||||||||||||| ||||||||||| ||| |||||| Sbjct 385 AAAATGGTTGAAGCTGTCATTAACGGTTATGAAGTTATTGAACCTAAATTTAAGTTTTAT 444 Query 28567 ACATGTCGTGA----AACCTCATATCTGCCTTTATACTATTCTGGAAAGCATAATGCATT 28622 | | | ||| | | | ||| | ||||| ||| ||||| || ||| ||| Sbjct 445 AACTTTTCTGATAGTAGCGGAGGAACTG-CATTATATTATGCTGGACAGTCTAAACAATT 503 Query 28623 AACACTATGTGAAGATAAAGCTCTTGAATTTGAAAAAGGAAGTAAAGGATATTTAGCTTT 28682 |||| || || | | ||||||||| || || | || || | | |||| |||||| Sbjct 504 AACAAAATTCGAGCAAGATGCTCTTGAAGTTAAAGAGGGGAGCGAGGAATATAAAGCTTT 563 Query 28683 AGAATATTTAGGTTTTTGTAAAGAAAAAGCATGATAAAATCTTTT 28727 | ||||||||| | ||||| ||| ||||||| ||||||| Sbjct 564 GTTAGCTTTAGGTTTCGTTGAAGAAGAAGTATGATAACATCTTTT 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411213408879238