Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq1001 325 8e-85 >seq1001 Length=29257 Score = 325 bits (360), Expect = 8e-85 Identities = 1072/1631 (66%), Gaps = 123/1631 (8%) Strand=Plus/Plus Query 15837 CGCACCCCATAACCGCAGGAGTTCC-CTCATGGCCACCGACTACCACCACGGCGTACGCG 15895 |||||||| ||||| | |||||| | |||| | ||||| || |||||||| | Sbjct 6670 CGCACCCCTTAACCAC-GGAGTTAAACAGATGGGC---GACTATCATCACGGCGTCGAGG 6725 Query 15896 TCATCGAAATCAACGGCGGCGTGCGTCCGATCCGCACTGTGGCCACCGCTATCGTCGGCG 15955 ||||||| || |||| ||| ||| | || ||| || | || || ||| ||||| Sbjct 6726 TCATCGAGATTAACGATGGCACGCGCACCATTTCCACCGTTTCGACGGCCATCATCGGCA 6785 Query 15956 TCGTCTGCACCGCGCAG-GACGCAGACGCCACGCTGTTCCCCCTCGACCGACCGGTGCTG 16014 | |||||||| || ||| || || ||||| | | |||||| | || ||||| ||| Sbjct 6786 TGGTCTGCACGGC-CAGCGATGCTGACGCAAAGACATTCCCCTTAAACGAGCCGGTACTG 6844 Query 16015 CTGACCGACGTGCTGGGCGCCGTCGGCAAGGCCGGCACCAGCGGCACGCTGCGCGCCA-C 16073 | | | ||||| || |||| || ||||| | | ||||||||| || | | Sbjct 6845 ATTAACAGCGTGCAAACGGCTATCGGTAAAGCCGGTAAAAAAGGCACGCTG-GCAAAATC 6903 Query 16074 GCTGCAGGCCATTGCCGACCAG-GCCAAC--GCCATTACCGTGGTGGTGCGCGTCACCGA 16130 ||||||||||| ||||||||| || ||| | |||| |||||||||||||| | || Sbjct 6904 CCTGCAGGCCATCGCCGACCAGTGCAAACCGGTCATT---GTGGTGGTGCGCGTTCCAGA 6960 Query 16131 AGGTTCCGACGAC--------------AGCGCC----------ACCACCGCCAACGTGAT 16166 |||| ||||||| |||| | |||| ||||| | || Sbjct 6961 AGGTGTCGACGACCCGGCAGACCCGGAAGCGGCGCAGAAAGAAACCATTTCCAACATCAT 7020 Query 16167 CGGCAAGAAGGACGG---CGCCACCTTCACCGGCATGCAGGCGCTGCTGGTGGCTGAGGC 16223 ||||| || |||| || || | |||||| || | |||||| | ||| | | Sbjct 7021 CGGCACGACCGACGAAAACGGCAAATACACCGGGCTGAAAGCGCTGTTAACGGCGAAAAC 7080 Query 16224 GCAGGTAGGCGTGCGTCCGCGCATCCTCGGCGCACCCGGTCTGGACACCCAGCCGGTTTC 16283 ||||| |||||||| ||||||| || || ||||| || ||| || | Sbjct 7081 CGTCACCGGCGTTAAGCCGCGCATTCTCGGCGTGCCGGGGCTGGATACGCAGGAAGTGGC 7140 Query 16284 GGCCGCACTGGCGGTCATC--GCCAAGAAGCTGCGCGCGATGGCCTACGTGAGCT----G 16337 | |||| || ||| ||| | |||| || ||||||||| | | |||||| ||| | Sbjct 7141 GACCGCGCTTGCG-TCAACCTGCCA-GAGCCTGCGCGCGTTCGGCTACGTAAGCGCGTGG 7198 Query 16338 TGCCGCCAGTGCCTCGGTCAGCGAGGCCATCGCCTATCGCGAGCAGTTCAGCCAGCGCGA 16397 || || || | | || ||| |||||| || || ||| | |||||||||||||| Sbjct 7199 GGCTGCAAGACCATT--TC--CGACGCCATCAAATACCGTGAGAATTTCAGCCAGCGCGA 7254 Query 16398 GCTGATGCTGATCTATCCCGACTTCGTCGCGTT---CAACACTGCCGACGCCACCACCA- 16453 ||||||| | || | || ||||| | || | || ||| || ||| ||| | Sbjct 7255 GCTGATGGTCATTCACCCTGACTTTCTGGCATGGGACACCACGGCGAACGAAACCGATAT 7314 Query 16454 -GCATGGCGTTCGCGACCGCCCGCGCCCTGGGCCTGCGCGCGATGATCGATGAGCAGCAG 16512 |||||| |||||||||||||| || ||||||||||| | ||||| || || Sbjct 7315 TGCATGG-----GCGACCGCCCGCGCGCTCGGCCTGCGCGCCAAAATCGACCAGGAGACC 7369 Query 16513 GGCTGGCACAAATCGATCTCCAATGTGGCCGTCGCCGGCGTGACCGGCATCAGCCGCGAC 16572 || ||||||||| || | || || || | ||| ||||| |||||| |||| ||| | Sbjct 7370 GGATGGCACAAAACGCTGTCTAACGTTGGCGTGAATGGCGTCACCGGCGTCAG-CGCCTC 7428 Query 16573 GTGCAC-TGGGACCTGCAAGATCCGGCGACCGACGCTGGCCTGCTGAACGCCGCCGACAT 16631 | | | ||||| |||| || | ||| |||||||| ||||||||| |||| | Sbjct 7429 GGTCTCATGGGATTTGCAGGAGCAGGCTACCGACGCCAACCTGCTGAATCAGGCCGGGGT 7488 Query 16632 CACCACCCTCATCAACTCCAACGGTTACAAGTTCTGGGGTTCGCGGACCTGCAGCGACGA 16691 || || || ||| | | |||| | ||||||||||| || |||||| ||||| Sbjct 7489 GACAACGCTAATCCGCAACGACGGCTTTAAGTTCTGGGGCAACCGTACCTGCTCGGACGA 7548 Query 16692 CCCGCTGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATTGC 16751 || | |||| || || | ||| ||||| |||||| | ||||||||||| || || Sbjct 7549 TCCTTTATTCGTGTTTGAAAACTACACCCGCACGGCGCAGGTGCTGGCCGACACGATGGC 7608 Query 16752 CGAGGCGCAGATGGTGTACATCGACAAGCCCGAGCATCCG--TCGCTCATCCGCGACATG 16809 |||||||| | | || ||||||||| | |||| |||| ||||||||||| Sbjct 7609 GGAGGCGCACGCGTGGGCGATGGACAAGCCC--GTTTCCGCAACGCTTATCCGCGACATT 7666 Query 16810 CTGGAGAGCATCAATGCCAAGTTCCGCGAGCTGGTGAACGCCGGCTA---CGTGGCTGGT 16866 | | | ||||||||||| |||||||||||| || |||||| ||| | || Sbjct 7667 GTCGCCGGTATCAATGCCAAATTCCGCGAGCTGAAAAATAACGGCTATATCGTTGACGGG 7726 Query 16867 GCATCGCT-GTACGACGAGCGGCCAACGAGCCCAGCCA-GCTG-AGGCTGG---GGTGAC 16920 ||| ||| ||||||| | | ||| | | | | ||| | || || | || Sbjct 7727 TCAT-GCTGGTACGACCCGGAGTCAAACACCGTGGAAACCCTGAAAGCCGGGAAGCTGTA 7785 Query 16921 AATCGACTACGACTACACGCCGGTACGCCCGCTGGAGAACCTGGTCCTGAACCAGCGCAT 16980 ||||| ||||||||||| || || | |||||||| |||||| |||| ||||||||| Sbjct 7786 TATCGATTACGACTACACCCCCGTCCCGCCGCTGGAAAACCTGACCCTGCGCCAGCGCAT 7845 Query 16981 CACCGACCGCTACTTCGCCGAC--TTCCCGGCCGTATCAACGGCTGATGCCGTACTGAGG 17038 |||||| ||| | || ||| || | || ||||| ||| | | || || Sbjct 7846 CACCGATACCTATCTGGCTGACCTGTCAGAGTCG-GTCAACAGCTAA---GGAGCTCAGA 7901 Query 17039 AACCATTCCCATGTCCATGCCCAGCAAGCTCAAGAATCTCAACCTGTTCAACGACGGCCT 17098 | |||| | | || |||| || || | || || |||| ||||||||||| Sbjct 7902 A--------CATGGCGTTACCACGCAAACTGAAATACCTGAATATGTTTAACGACGGCCT 7953 Query 17099 CAGCTACCTGGGCCAGGTCACCGA---GGTCAAGCTGCCGACCTTGACCCGCAAGATGGA 17155 ||||||| ||||| ||| || |||| ||||| | ||||||||||| | || Sbjct 7954 CAGCTACATGGGC---GTCGTTGAATCCGTCACCCTGCCAAAGCTGACCCGCAAGCTTGA 8010 Query 17156 GGAATACCGCGCCGGCGGCATGCTCGGTCCC---ATCGATATTGACCTCGGCCAAGAGAA 17212 | ||||||||| |||||| |||| ||| | | ||| ||||||||||| | || | Sbjct 8011 GAAATACCGCGGCGGCGGGATGC-CGGGCTCGGTGTCG--ATTGACCTCGGTCTCGACGA 8067 Query 17213 AATCGAACTG------GAATGGAAGTGTGGCGGACTGATGCGCGACGTGCTGCG---CCA 17263 || ||| || |||| | ||||| ||| || || |||| | || Sbjct 8068 CGACGCGCTGTCGCTTGAGTGGACGCTGGGCGGCCTGCCTGACGTCGAGCTGTGGGCGCA 8127 Query 17264 GTACGGCGCCATC----GCCCACAACGCCGTGCAGCTGCGATTCGCTGGCGCCTATCAGC 17319 |||| ||| || | ||| ||| ||||| |||||| ||| | ||| | | |||| Sbjct 8128 GTAC-GCGTCACCGGGTGCCGACA---GCGTGCCGCTGCGCTTCACCGGCTCTTTCCAGC 8183 Query 17320 GCGAAGACAGCGCAGACGTGGACTCGGTCGAGATCGTCATCCGCGGCCGTCACAGCGAGA 17379 |||| |||| || | | | | || ||| | ||||| || |||||||||| ||| Sbjct 8184 GCGACGACACCGGCGCTATTTCCGCCGTTGAGGTGGTCATGCGTGGCCGTCACAAGGAGT 8243 Query 17380 TCGACGCCGGC 17390 ||||| |||| Sbjct 8244 ACGACGGCGGC 8254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107156117124236