Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq78 111 1e-18
seq218 91.5 1e-12
seq44 87.8 1e-11
>seq78
Length=1090682
Score = 111 bits (122), Expect = 1e-18
Identities = 226/333 (68%), Gaps = 2/333 (1%)
Strand=Plus/Plus
Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247
|| || || || |||||||||||||| | ||| | || | |||| | |||| ||
Sbjct 325638 CGGTTGTCGAAGTCTTCACCTCCCAAGTGAGTGTCACCGGCGGTAGACTTGACTTCAAAG 325697
Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307
| ||||| || | | || | | |||||| ||| || ||||| | || |||||
Sbjct 325698 ATACCATCCTCGATGGTCAGGATGGACACATCAAAGGTGCCGCCACCAAGGTCGAAAATG 325757
Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367
|| || || ||| || || || || ||||| || |||| |||||||||||
Sbjct 325758 AGAACGTTACGTTCGCCACCTCCCTTCTTGTCGAGACCGTAAGCAATCGCAGCAGCAGTC 325817
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
||||| || ||||| | | |||||| | |||| || | || | |||||| |||||
Sbjct 325818 GGTTCGTTGATAATACGGAGAACATTTAAGCCAGAGATCGTACCCGAATCTTTTGTGGCC 325877
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTT 282486
|| |||||||| || || ||||| || ||||| || || || ||| |||| || |||
Sbjct 325878 TGCCTTTGTGAGTCATTGAAATAGGCGGGAACCGTGATTACTGCATTCTG-CACCGTTTT 325936
Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519
|| | ||||| || |||| ||||||||
Sbjct 325937 ACCGAGGTAAGCCTCAGCAGTTTCCTTCATTTT 325969
>seq218
Length=579551
Score = 91.5 bits (100), Expect = 1e-12
Identities = 195/289 (67%), Gaps = 2/289 (1%)
Strand=Plus/Plus
Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490
||| || ||||| || ||||| |||| || || || || || |||| |||||| ||||
Sbjct 246740 CACGTTGAGAATGCCGTTGGCGTCCATGTCGAACGTCACGTCGATTTTAGGGACACCTCG 246799
Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550
| | || || ||||| || || | || || || || || || |||||||| |
Sbjct 246800 CGGCGCCGGCGGGATGCCCGTCAGGTCGAAGGTACCGAGCAGGTTGTTGTCTTTAGTCAT 246859
Query 281551 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610
||||| |||||| | | ||| ||||| || | | || || || || || || ||
Sbjct 246860 GGCGCGTTCTCCCTCGTACACTTGAATAGTGACGGCGGGCTGGTTGTCCGAGTAGGTGGT 246919
Query 281611 AAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 281669
|| |||| || | || || || || | | ||| | || || || |||||||| |
Sbjct 246920 GAACG-TCTGCGACTGCTTGCAGGGGATCTTGGAGTTGCGCTCGATGATCTTGGTCATGA 246978
Query 281670 TACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAG 281718
|| ||||||||||||| || || || ||||||| || || || ||
Sbjct 246979 CGCCGCCAGCTGTTTCTATGCCGAGGGATAGAGGAGCCACGTCCACCAG 247027
>seq44
Length=1468026
Score = 87.8 bits (96), Expect = 1e-11
Identities = 179/266 (67%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673
|| || || ||||| | ||||| |||| ||| | | |||| | || | | ||
Sbjct 1242543 ACCTTGAAAGGCCAGTGCTTCATGTCTGCTTGTATCTTGGGGTCGTCGAACTTACGTCCG 1242602
Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733
|| | || ||||| || || | || ||| | || || | || | || | ||||||
Sbjct 1242603 ATGAGTCTCTTTGCGTCGAACACGGTGTTGTTGGGGTTCAGCGCCACCTGGTTCTTGGCT 1242662
Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793
|||||||| ||||| | || || || || || | |||||||||||||| || | ||
Sbjct 1242663 GCATCTCCGATCAGCCGCTCCGTGTCCGTGAAAGCCACATATGATGGAGTAGTCCTGTTG 1242722
Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 282853
|| || || ||||| || ||||| || || || | ||||| || || ||||| | |
Sbjct 1242723 CCCTGGTCGTTCGCGATGATTTCCACGTTTCCGTGCTGCCACACTCCCACACACGAATAC 1242782
Query 282854 GTTGTTCCTAAATCAATACCAATAGC 282879
|| ||||| | ||| || || | |||
Sbjct 1242783 GTCGTTCCAAGATCGATTCCTACAGC 1242808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740542322181444
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |