Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq78 111 1e-18 seq218 91.5 1e-12 seq44 87.8 1e-11 >seq78 Length=1090682 Score = 111 bits (122), Expect = 1e-18 Identities = 226/333 (68%), Gaps = 2/333 (1%) Strand=Plus/Plus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || || || |||||||||||||| | ||| | || | |||| | |||| || Sbjct 325638 CGGTTGTCGAAGTCTTCACCTCCCAAGTGAGTGTCACCGGCGGTAGACTTGACTTCAAAG 325697 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||||| || | | || | | |||||| ||| || ||||| | || ||||| Sbjct 325698 ATACCATCCTCGATGGTCAGGATGGACACATCAAAGGTGCCGCCACCAAGGTCGAAAATG 325757 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 || || || ||| || || || || ||||| || |||| ||||||||||| Sbjct 325758 AGAACGTTACGTTCGCCACCTCCCTTCTTGTCGAGACCGTAAGCAATCGCAGCAGCAGTC 325817 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 ||||| || ||||| | | |||||| | |||| || | || | |||||| ||||| Sbjct 325818 GGTTCGTTGATAATACGGAGAACATTTAAGCCAGAGATCGTACCCGAATCTTTTGTGGCC 325877 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTT 282486 || |||||||| || || ||||| || ||||| || || || ||| |||| || ||| Sbjct 325878 TGCCTTTGTGAGTCATTGAAATAGGCGGGAACCGTGATTACTGCATTCTG-CACCGTTTT 325936 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 || | ||||| || |||| |||||||| Sbjct 325937 ACCGAGGTAAGCCTCAGCAGTTTCCTTCATTTT 325969 >seq218 Length=579551 Score = 91.5 bits (100), Expect = 1e-12 Identities = 195/289 (67%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 ||| || ||||| || ||||| |||| || || || || || |||| |||||| |||| Sbjct 246740 CACGTTGAGAATGCCGTTGGCGTCCATGTCGAACGTCACGTCGATTTTAGGGACACCTCG 246799 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 | | || || ||||| || || | || || || || || || |||||||| | Sbjct 246800 CGGCGCCGGCGGGATGCCCGTCAGGTCGAAGGTACCGAGCAGGTTGTTGTCTTTAGTCAT 246859 Query 281551 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610 ||||| |||||| | | ||| ||||| || | | || || || || || || || Sbjct 246860 GGCGCGTTCTCCCTCGTACACTTGAATAGTGACGGCGGGCTGGTTGTCCGAGTAGGTGGT 246919 Query 281611 AAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 281669 || |||| || | || || || || | | ||| | || || || |||||||| | Sbjct 246920 GAACG-TCTGCGACTGCTTGCAGGGGATCTTGGAGTTGCGCTCGATGATCTTGGTCATGA 246978 Query 281670 TACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAG 281718 || ||||||||||||| || || || ||||||| || || || || Sbjct 246979 CGCCGCCAGCTGTTTCTATGCCGAGGGATAGAGGAGCCACGTCCACCAG 247027 >seq44 Length=1468026 Score = 87.8 bits (96), Expect = 1e-11 Identities = 179/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 || || || ||||| | ||||| |||| ||| | | |||| | || | | || Sbjct 1242543 ACCTTGAAAGGCCAGTGCTTCATGTCTGCTTGTATCTTGGGGTCGTCGAACTTACGTCCG 1242602 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733 || | || ||||| || || | || ||| | || || | || | || | |||||| Sbjct 1242603 ATGAGTCTCTTTGCGTCGAACACGGTGTTGTTGGGGTTCAGCGCCACCTGGTTCTTGGCT 1242662 Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793 |||||||| ||||| | || || || || || | |||||||||||||| || | || Sbjct 1242663 GCATCTCCGATCAGCCGCTCCGTGTCCGTGAAAGCCACATATGATGGAGTAGTCCTGTTG 1242722 Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 282853 || || || ||||| || ||||| || || || | ||||| || || ||||| | | Sbjct 1242723 CCCTGGTCGTTCGCGATGATTTCCACGTTTCCGTGCTGCCACACTCCCACACACGAATAC 1242782 Query 282854 GTTGTTCCTAAATCAATACCAATAGC 282879 || ||||| | ||| || || | ||| Sbjct 1242783 GTCGTTCCAAGATCGATTCCTACAGC 1242808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740542322181444