Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq197 118 1e-21 seq1030 82.4 7e-11 >seq197 Length=620651 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 |||||||| | ||||||||| | ||| | ||||||||||| || |||||||| ||| | Sbjct 447162 CCTCCTCGCAGACGCAAAACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAC 447221 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| || || || || ||| |||||| | ||||| || || || Sbjct 447222 AAGGTGCGGCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 447281 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| || || ||| | | || | ||||||| | ||| ||| Sbjct 447282 ATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCTGAAGCTTCAACT 447341 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | |||||||| |||| ||||| ||||| || |||||| Sbjct 447342 TCCAGAGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATA 447389 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || || |||| || || ||||| || || || || || | Sbjct 446706 CCACCACGCAGACGCAATACCAAGTGAAGAGTCGACTCTTTCTGGATATTATAGTCTGAC 446765 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | |||||| ||||||||||| || |||| || || ||||| |||||||| Sbjct 446766 AATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGG 446825 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| || || || | | || | ||||||| | ||| ||| Sbjct 446826 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACT 446885 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | |||||||| || | ||||| ||||| || |||||| Sbjct 446886 TCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCATA 446933 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||||||||| | ||| | ||||| || || || |||||||| ||| | Sbjct 447650 CCTCCGCGCAGACGCAAAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 447709 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || || || ||||||||||| |||| ||||| || || |||||||| Sbjct 447710 AAGGTGCGACCATCCTCCAGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGGGAGGG 447769 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || ||||| || || || | | || | ||||||| | ||| ||| Sbjct 447770 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACT 447829 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | || | ||||| || |||| ||||| ||||| || |||||| || Sbjct 447830 TCCAGGGTGATGGTCTTTCCTGTCAGAGTTTTGACGAAAATCTGCATACCT 447880 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || || |||| || || ||||| || || || || || | Sbjct 448863 CCACCACGCAGACGCAATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCAGAC 448922 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | |||||| ||||||||||| || |||| || || ||||| |||||||| Sbjct 448923 AATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGG 448982 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| || || || | | || | ||||||| | ||| ||| Sbjct 448983 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCCACT 449042 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | |||||||| || | ||||| ||||| || |||||| Sbjct 449043 TCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCATA 449090 >seq1030 Length=27445 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | | ||| || || |||| |||||||| || || |||||||| ||| | Sbjct 2674 CCTCCTCTAAGCCTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 2733 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | || || || ||||||||||| ||||||| || ||||| || || || Sbjct 2734 AGGGTACGGCCATCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGG 2793 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| || || ||| | | ||| | ||||| | | || || Sbjct 2794 ATACCCTCCTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCCACC 2853 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| || | |||||||| || | || || ||||| || |||||| Sbjct 2854 TCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATA 2901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488533044400800