Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq962 277 3e-69 >seq962 Length=32987 Score = 277 bits (306), Expect = 3e-69 Identities = 765/1155 (66%), Gaps = 21/1155 (2%) Strand=Plus/Plus Query 27885 TTCATGCATACCGATGTAACCGATACTAACAGATGCGCGACCGTTGTCAAATGCTTTCAT 27944 |||||| || ||||| || || | || || ||||| ||||| | || | | ||| Sbjct 24595 TTCATGGATGCCGATATAGCCCAGCGAAATCGACGCGCGGCCGTTTTTGAA-GATCTCAG 24653 Query 27945 -GATATCGTCATCTGGGTTCAGACGAACACCACAAGCACCTTCAACGTAAAGAATCGGAG 28003 || || || || | ||||| || || || || || ||||| | || || || || | Sbjct 24654 AGACGTCATCGTCCGCTTTCAGGCGCACGCCGCAGGCCCCTTCCATATAGAGGATAGGCG 24713 Query 28004 CGACGCTGGCTTTAACGCCACGCAGACGATCAACGCGAGCCATCAAAGC-TTGCTTGGTG 28062 | |||| |||||| || || || || | | || | ||||| || |||| | Sbjct 24714 CCACGCGGGCTTTTACCCCTTCAAGGCGGGCGATACGGGTCATCAGCGCCTTGCGCGCC- 24772 Query 28063 ATTTCCATACGTTCTTCCAGAAGATCCCAGAAAC--GCATAGGATTGCCATTTGAATCAA 28120 | | || ||||| ||||| || |||||| || | |||||| || | || | Sbjct 24773 AGCTGCAGGCGTTCATCCAGCAGTGTCCAGAATTCAGCTTC--ATTGCCTTTGGCCTCCA 24830 Query 28121 GAGCGATTCGCGGCAAGTTCAGAGTGACCACACCCAAGTTGTTACGGCCTTCATGAACTT 28180 | ||||| ||||||| |||||| ||| || || | ||||||||| || || || | | Sbjct 24831 GCGCGATGCGCGGCAGGTTCAGGCTGATGACGCCGAGGTTGTTACGCCCGTCGTGGATCT 24890 Query 28181 CAACACCGTTTTCGTCTTCCCAG-CGATGCAAGAAACTACGGCATCCCATTGGGAATTTG 28239 | |||||||| ||||| | || | | ||| || ||||| |||||||| ||| Sbjct 24891 GCTCGCCGTTTTCATCTTCGTATACGCCG-AGGAAGCTGCGGCAACCCATTGGCGTTTTA 24949 Query 28240 AAACTACCAGTCACTTCAACGATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTC 28299 || || || |||| |||| || ||| ||| ||||||| ||||| ||||| || || Sbjct 24950 AATGACCCGGTTACTTTTACGACCTGATCGTAGTTCAGAATATCCGGGTACATGCGCTTG 25009 Query 28300 GCAGCGCATTCCAGAGCCAACTGTTTGATACGATACAGCGGATCAGTCGGGTTCAAGTTG 28359 ||||| ||||| |||| ||||||||| || |||||| || ||| Sbjct 25010 CTCGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAATTCGGATCGCCAACTTTGTGGTTC 25069 Query 28360 TGTCCGTCTTTCAGAGCGAATACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACCA 28419 | ||||| | |||||||||||||||||||| || | || | | | ||||| Sbjct 25070 AGCCCGTCGCGGATGGCGAATACCAGTTTCGGGAACACCGCCGTTTTGCGGTTCTTACCG 25129 Query 28420 AGACCAGCCAAACGAACTTTCAGGATTGCTTCTTGAATCAGTTCTGACTCCCAGCTAGTA 28479 || || | | ||| |||||| | | || |||| || |||||||| || Sbjct 25130 AGGCCGGAGATACGGTTGCGCAGGATGGACTGCTGGATCAAACGCGATTCCCAGCTGGTG 25189 Query 28480 CCAAGACCAAAGCCGAAGGT-ACAGAACGGAGTTTGACCATTTGCGGAGTGCAGAGTGTT 28538 || || ||||| |||||||| ||| ||||| || || || || |||| ||||| || || Sbjct 25190 CCCAGGCCAAAACCGAAGGTCACA-AACGGCGTCTGGCCGTTGGCGGTATGCAGGGTATT 25248 Query 28539 GACCTCATACTCCAGACCTTGCATAGCATCATATACAGCTTTGCGAGTCTTTGCAATAGC 28598 |||||||||||||| || | || ||||| |||| ||| || | || Sbjct 25249 CACCTCATACTCCAGCGACTGGAACGCGTCATAGCACTCTTTCTCAGTGC--GCGAGTGC 25306 Query 28599 ATATTGCTGTTGA--TCTGGAATTTTCCAGTAA-CGAGCTTCATCCAAGTGCTTTTCGTG 28655 || || || | || || || | ||| | || | | | | |||||| | | Sbjct 25307 GCATAGCCGTCGGCGTCCGGGATCTGCCACTCTTCGGCCGTTTTGCG-GTGCTTGTTGAA 25365 Query 28656 TGTCATTTTAACATACGGTGCCAGCACTTCGTCAATGCGATTGATTGTGTTACCGCCATA 28715 | | ||| |||| |||||||||||||||||||| || || ||| | ||||| || Sbjct 25366 GCTTGCGGTCACAAACGGGGCCAGCACTTCGTCAATGCGGTTAATGGTGGTGCCGCCGTA 25425 Query 28716 AATGTGACTTGCTACTTGAGCGATGATTTGAGCAATCACGGCAGCAGCGGTAGAAATGCT 28775 |||||| || || || || ||||| || || || | || |||| ||||| || ||| Sbjct 25426 AATGTGGCTGGCGACCTGGGCGATAATCTGTGCCGTGACCGCAGTGGCGGTGGAGATGGA 25485 Query 28776 TTTCGGAGTCTCGATTTGAGCATTACCCATTCTGAAACCACGTTTCAACATTCCTTCAAC 28835 ||| || | || || | || ||||||||| | || || | ||| ||| |||| | Sbjct 25486 TTTTGGCGGTTCAATCTCGGCGTTACCCATTTTAAACCCGTGGGTCAGCATGCCTTTCAG 25545 Query 28836 ATCTATCAACATGCAGTTAAACATTGGGAAGAACGGTGAATAATCAAGATCGTGGAAGTG 28895 || |||| ||| ||||| ||||| ||||||||||||||||| || |||||||| |||| Sbjct 25546 GTCAATCAGCATACAGTTGAACATCGGGAAGAACGGTGAATAGTCGAGATCGTGATAGTG 25605 Query 28896 AATCCAACCATTTTCGTGTGCTTGCATAACTTCAACAGGCAGATAATGCT---TGGCGAA 28952 ||| ||| ||||| ||| | || || ||||| |||| ||| | Sbjct 25606 GATCTCACCGCGCTCGTGCGCTGAGACCACATCGCGCGGCAGCAGGTGCTGACGGGCATA 25665 Query 28953 ATGCTTACTAACGATACCAGCTACCAAATCGCGTTGAGTTGGAATTACCTTGGCGTCTTT 29012 || || |||||||| || | || |||||| || || || || || || |||||| Sbjct 25666 GTGTTTGGCGACGATACCGGCCAGCAGATCGCGCTGGGTGGGGATCACTTTACTGTCTTT 25725 Query 29013 GTTTGCATTTTCATT 29027 ||| || |||||||| Sbjct 25726 GTTGGCGTTTTCATT 25740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710275271719840