Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq651 120 1e-21 seq955 84.2 7e-11 seq952 84.2 7e-11 >seq651 Length=115633 Score = 120 bits (132), Expect = 1e-21 Identities = 283/423 (67%), Gaps = 6/423 (1%) Strand=Plus/Plus Query 188779 GGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTA 188838 ||||| || ||||| |||||||| | | ||| |||| |||| | || | |||| Sbjct 80520 GGCCCAACCGGTTCCGGTAAAACGCTGCTGGCTGAAACCCTGGCGCGTCTGCTTGATGTT 80579 Query 188839 CCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTG 188898 || | | || | ||||| || | | || ||||| ||||| || ||||| || || Sbjct 80580 CCGTTCACCATGGCGGATGCCACCACCCTGACCGAAGCCGGTTACGTGGGTGAGGACGTC 80639 Query 188899 GAAAACGTATTGCTTCGTTTAATCCAAGCAGCT-GATTACGA--TATCGAATTAGCGGAA 188955 |||||| | | | | | || | || |||||||| || ||| ||| | Sbjct 80640 GAAAACATCATCCAGAAACTGCTGCA-GAAGTGCGATTACGACGTACAGAA--AGCCCAG 80696 Query 188956 CGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCC 189015 || || ||||| || |||||||| | || || || | | ||||| || | | | ||| Sbjct 80697 CGCGGGATTGTTTACATCGATGAGATCGACAAGATCTCCCGTAAATCCGACAACCCGTCC 80756 Query 189016 ATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGT 189075 || || || || ||||| || ||||| |||||||| || | | || | || |||||| Sbjct 80757 ATCACTCGTGACGTATCGGGTGAAGGCGTACAGCAGGCACTGCTGAAGCTGATCGAAGGT 80816 Query 189076 ACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAA 189135 || ||||| ||||| || || |||||||||||||| || || || || | || | Sbjct 80817 ACGGTTGCCGCCGTTCCGCCACAGGGTGGTCGTAAACATCCGCAGCAGGAGTTCCTGCAG 80876 Query 189136 ATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATT 189195 | ||||| | || ||| |||| || ||| || || |||| |||||| || || || Sbjct 80877 GTTGATACCTCCAAGATCCTGTTCATCTGTGGCGGTGCCTTTGCTGGTCTGGATAAAGTT 80936 Query 189196 ATC 189198 ||| Sbjct 80937 ATC 80939 >seq955 Length=33606 Score = 84.2 bits (92), Expect = 7e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 403939 GTGCGCCTGTAGCTCAGCTGGATAGAGCACGAGCCTTCTAAGCCCGCGGTCGTAGGTTCG 403998 ||||||| |||||||| ||||||||||| |||||||||||| ||||||||||||| Sbjct 1506 GTGCGCCCTTAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCGTAGGTTCG 1447 Query 403999 AATCCTACCAGGCG 404012 |||||||| |||| Sbjct 1446 AATCCTACAGGGCG 1433 >seq952 Length=33737 Score = 84.2 bits (92), Expect = 7e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 403939 GTGCGCCTGTAGCTCAGCTGGATAGAGCACGAGCCTTCTAAGCCCGCGGTCGTAGGTTCG 403998 ||||||| |||||||| ||||||||||| |||||||||||| ||||||||||||| Sbjct 12145 GTGCGCCCTTAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCGTAGGTTCG 12086 Query 403999 AATCCTACCAGGCG 404012 |||||||| |||| Sbjct 12085 AATCCTACAGGGCG 12072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591873808944512