Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_024124.2
Length=169148
Score E
Sequences producing significant alignments: (Bits) Value
seq236 196 5e-45
seq637 156 5e-33
>seq236
Length=545527
Score = 196 bits (216), Expect = 5e-45
Identities = 155/185 (84%), Gaps = 1/185 (1%)
Strand=Plus/Plus
Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481
|||||||| ||||| ||||| ||||| ||||| || ||||| ||| || || ||| ||
Sbjct 30716 GGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCGGTTGAG 30775
Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541
|| || |||||||| || ||||||||||| || || || |||||||| || ||||| |||
Sbjct 30776 CACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGCTTCAAC 30835
Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 108601
|||||||| |||||||||||||||||||||||||| |||||||||||||| || || |||
Sbjct 30836 TCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGAAAGCCTGTAA 30895
Query 108602 TGGCT 108606
||||
Sbjct 30896 -GGCT 30899
>seq637
Length=122170
Score = 156 bits (172), Expect = 5e-33
Identities = 137/171 (80%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481
|||||||| ||||||||||| ||||| || ||||||| ||| ||||| | |
Sbjct 107285 GGTGGTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGCGATGGAA 107226
Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541
||||| || ||||||||||||||||||||||||||||| || || ||||| || ||||||
Sbjct 107225 CATCCTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACGTTTTAAC 107166
Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAG 108592
|| |||||| ||||||||||| ||||||||| | ||||| || ||| ||
Sbjct 107165 TCCCTGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCACTCAG 107115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 541133464809920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |