Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq236 196 5e-45 seq637 156 5e-33 >seq236 Length=545527 Score = 196 bits (216), Expect = 5e-45 Identities = 155/185 (84%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 |||||||| ||||| ||||| ||||| ||||| || ||||| ||| || || ||| || Sbjct 30716 GGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCGGTTGAG 30775 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 || || |||||||| || ||||||||||| || || || |||||||| || ||||| ||| Sbjct 30776 CACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGCTTCAAC 30835 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 108601 |||||||| |||||||||||||||||||||||||| |||||||||||||| || || ||| Sbjct 30836 TCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGAAAGCCTGTAA 30895 Query 108602 TGGCT 108606 |||| Sbjct 30896 -GGCT 30899 >seq637 Length=122170 Score = 156 bits (172), Expect = 5e-33 Identities = 137/171 (80%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 |||||||| ||||||||||| ||||| || ||||||| ||| ||||| | | Sbjct 107285 GGTGGTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGCGATGGAA 107226 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 ||||| || ||||||||||||||||||||||||||||| || || ||||| || |||||| Sbjct 107225 CATCCTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACGTTTTAAC 107166 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAG 108592 || |||||| ||||||||||| ||||||||| | ||||| || ||| || Sbjct 107165 TCCCTGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCACTCAG 107115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541133464809920