Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq197 161 2e-34 >seq197 Length=620651 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||| || ||||| ||||| || |||||||| |||||||| || | Sbjct 446704 TACCACCACGCAGACGCAATACCAAGTGAAGAGTCGACTCTTTCTGGATATTATAGTCTG 446763 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||||||||||||||||| || || ||||| |||| || || || |||| Sbjct 446764 ACAATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAG 446823 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| || || ||||| || || || || || ||| | Sbjct 446824 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAA 446883 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| ||| || |||||||| || | || || || || |||||||| Sbjct 446884 CTTCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 446932 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||| || ||||| || || || |||||||| |||||||| |||| Sbjct 448861 TACCACCACGCAGACGCAATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCAG 448920 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||||||||||||||||| || || ||||| |||| || || || |||| Sbjct 448921 ACAATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAG 448980 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| || || ||||| || || || || || ||| | Sbjct 448981 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCCA 449040 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| ||| || |||||||| || | || || || || |||||||| Sbjct 449041 CTTCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 449089 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || |||||| || ||||| ||||| || || ||||| || || || || | Sbjct 447876 TACCTCCGCGCAGACGCAGTACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGG 447935 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| | | || ||||||||||| || ||||| ||||| || | || || ||||| | Sbjct 447936 ATAGGGTGCGGCCATCTTCTAGTTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGGG 447995 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || |||||||| || || || || || ||| | Sbjct 447996 GGATACCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCAA 448055 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| ||| || ||||| || |||| ||||| || || ||||||||| Sbjct 448056 CTTCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCATT 448105 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| || ||||| ||| | || || |||||||||||||| || || || || | Sbjct 447160 TACCTCCTCGCAGACGCAAAACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGG 447219 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | |||||||| || || || || |||||||| | || || || ||||| | Sbjct 447220 ACAAGGTGCGGCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGG 447279 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || || ||||| ||||| ||||| ||||| || || || || || ||| | Sbjct 447280 GAATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCTGAAGCTTCAA 447339 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| ||| || |||||||| |||| || || || || |||||||| Sbjct 447340 CTTCCAGAGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 447388 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | || | ||| | || || ||||| || ||||| || || || |||||| Sbjct 448106 CCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAT 448165 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||||||||||| || || ||||| ||||| || | || || || ||||| Sbjct 448166 AAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAGGA 448225 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || |||||||| || || || || || ||| ||| Sbjct 448226 ATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCGACT 448285 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| || || || || |||||||| Sbjct 448286 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 448332 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | || | ||| | || || ||||| || ||||| || || || |||||| Sbjct 446478 CCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAT 446537 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||||||||||| || || ||||| ||||| || | || || || ||||| Sbjct 446538 AAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAGGA 446597 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || |||||||| || || || || || ||| ||| Sbjct 446598 ATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCGACT 446657 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| || || || || |||||||| Sbjct 446658 TCTAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 446704 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || |||||| || |||||||| || || |||||||| || || || || | Sbjct 449564 TACCACCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGG 449623 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | |||||||| || || || ||||| ||||| || | || || || || | Sbjct 449624 ACAAGGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCG 449683 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || || || ||||| || || || || || || || || ||| || | Sbjct 449684 GGATGCCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCTGCAGGCTCGA 449743 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || || || || |||| ||||| || ||||||||||| Sbjct 449744 CCTCCAAAGTGATGGTTTTCCCAGTCAGGGTCTTCACGAATATCTGCAT 449792 Score = 109 bits (120), Expect = 1e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||| || ||||| || || || |||||||| |||||||| |||| Sbjct 447388 TACCACCACGCAGACGCAATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCAG 447447 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||||||||||||||||| || || ||||| |||| || || || |||| Sbjct 447448 ACAATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAG 447507 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGC 82729 | || || ||||| ||||| ||||| || Sbjct 447508 GGATGCCCTCCTTGTCTTGGATCTTGGC 447535 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || ||||| || ||||| || || ||||||||||| || || || |||| Sbjct 448589 TACCTCCACGCAGACGCAATACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 448648 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| || ||||| ||||| || || ||||| | || || || ||||| | Sbjct 448649 ATAAGGTGCGACCATCCTCTAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGG 448708 Query 82702 GTATTCCTTCCTT 82714 | ||||| || || Sbjct 448709 GAATTCCCTCTTT 448721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981804632088166