Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq486 84.2 5e-11 >seq486 Length=217039 Score = 84.2 bits (92), Expect = 5e-11 Identities = 266/407 (65%), Gaps = 4/407 (1%) Strand=Plus/Minus Query 110751 GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTT 110810 ||| | || || |||| ||||| || ||||| | || ||||| || ||| |||| ||| Sbjct 176134 GGCGCCTTCGCCGTCTACCTCGAGCCGTGGCACGCTGACATATTCGAGTTCCTAGA-CTT 176076 Query 110811 CGTAAAAATCAAGGATTT-GAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGAT 110869 || | || || || ||| | || || || | || ||||| ||||||| Sbjct 176075 GAAGAAGAACACGGGCAAAGAGGAAGTGCGCGCGCGAGAGCTGTTCTATGCTCTGTGGAT 176016 Query 110870 TTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCA 110929 |||||| |||||||||| | ||| | | || | |||| |||||||| ||||| Sbjct 176015 CTCAGATCTATTCATGAAGAGGGTTGAGAACAACGAGGAGTGGAGCCTTATGTGCCCTCA 175956 Query 110930 TCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATA 110989 ||||| | ||||| | ||| | || ||||| | | || | ||||| Sbjct 175955 CGACAGCCCTGGCTTGGCTGATTGTTGGGGAGATGAATTTGATGCATTATATCAGAAATA 175896 Query 110990 TGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCT 111049 |||| ||||||| | |||| ||| || | | |||||| || ||| || | Sbjct 175895 TGAACAAGAAGGTAGGTTTGTTAAAAAAGTCCGCGCTCAAATCCTATGGAAGGCTATTAT 175836 Query 111050 TGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT-CATATTAATCGCA 111108 ||| ||||||| || ||||||||||| || || | || |||||| ||| || | | Sbjct 175835 TGAGGCACAAGTAGAGACTGGAACTCCATACATGCTTTACAAAGATGCAT-GCAACAGAA 175777 Query 111109 AATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 | ||||||| |||||| ||||| || || | || ||| | ||| Sbjct 175776 AGAGCAATCAAAAGAATTTGGGAACCATCAAATGCAGCAATCTATGC 175730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186785520366034