Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq236 192 6e-44 seq637 149 7e-31 seq974 89.7 6e-13 seq895 82.4 8e-11 >seq236 Length=545527 Score = 192 bits (212), Expect = 6e-44 Identities = 156/188 (83%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 61273 AGCCATTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTC 61332 |||| ||| || || |||||||||||||| ||||||||||||||||| ||||| || ||| Sbjct 30899 AGCC-TTACAGGCTTTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTC 30841 Query 61333 AGAGAGTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 61392 |||||||| ||||| || ||||| || || || || |||||||||||||| |||||||| Sbjct 30840 AGAGAGTTGAAGCGTACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCT 30781 Query 61393 GGATGCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGA 61452 || |||| ||| || || ||| ||||| || ||||| ||||| ||||| ||||| ||| Sbjct 30780 GGGTGCTCAACCGCGTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGA 30721 Query 61453 CCACCTTC 61460 |||||||| Sbjct 30720 CCACCTTC 30713 >seq637 Length=122170 Score = 149 bits (164), Expect = 7e-31 Identities = 139/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 61287 CTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGCG 61346 || ||| || ||||| | ||||||||| |||| ||||| |||||| |||||||| || Sbjct 107115 CTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACG 107174 Query 61347 AACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 61406 ||||| || || |||||||||||||||||||| |||||||| || ||||| | | || Sbjct 107175 TACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGC 107234 Query 61407 ATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61463 ||| ||| ||||||| || ||||| ||||||||||| ||||||||||| || Sbjct 107235 ATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTCGAT 107291 >seq974 Length=31311 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 141933 TCCACACCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCACATCGGA 141992 || ||||| ||| |||||||| || | ||| | || ||||| | ||||||||| || Sbjct 1 TCAACACCACGGTTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGG 60 Query 141993 TAATACGCTGTAGCAGCACCGCCGCGAATACCACCTTGAGAACAAGATTTTACTGCAGTT 142052 || || || |||||||||||||| | || || ||||| || |||||||| || || Sbjct 61 TAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTC 120 Query 142053 TGGAAATGTTTCCAGAATGGAATA 142076 ||||| || || |||| || ||| Sbjct 121 TGGAAGTGCTTATAGAACGGGATA 144 >seq895 Length=39754 Score = 82.4 bits (90), Expect = 8e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 61291 GTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61350 ||||| || || | || || || |||| || || | ||||| | ||||| || || Sbjct 11880 GTAAACGTTCGCGAAATCACATCCTGCTGCTGCTCGCGCGTCAGGGCATTAAACCGCACC 11939 Query 61351 GCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61410 ||||| || || || ||||||||||| | ||| || || || |||||| || ||||| Sbjct 11940 GCATAGCCCGAGACGCGGATGGTCAGGTTCGGGTAGTTCTCGGGATGCGCAATGGCATCG 11999 Query 61411 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61463 || | || || || ||||||||||||||||| || || || ||||| Sbjct 12000 AGGAGCATCTCCCGGTTCATCACGTTAACGTTCAGGTGCTGCCCGCCCTCAAT 12052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535277596130720