Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_024794.1
Length=167318
Score E
Sequences producing significant alignments: (Bits) Value
seq236 192 6e-44
seq637 149 7e-31
seq974 89.7 6e-13
seq895 82.4 8e-11
>seq236
Length=545527
Score = 192 bits (212), Expect = 6e-44
Identities = 156/188 (83%), Gaps = 1/188 (1%)
Strand=Plus/Minus
Query 61273 AGCCATTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTC 61332
|||| ||| || || |||||||||||||| ||||||||||||||||| ||||| || |||
Sbjct 30899 AGCC-TTACAGGCTTTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTC 30841
Query 61333 AGAGAGTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 61392
|||||||| ||||| || ||||| || || || || |||||||||||||| ||||||||
Sbjct 30840 AGAGAGTTGAAGCGTACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCT 30781
Query 61393 GGATGCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGA 61452
|| |||| ||| || || ||| ||||| || ||||| ||||| ||||| ||||| |||
Sbjct 30780 GGGTGCTCAACCGCGTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGA 30721
Query 61453 CCACCTTC 61460
||||||||
Sbjct 30720 CCACCTTC 30713
>seq637
Length=122170
Score = 149 bits (164), Expect = 7e-31
Identities = 139/177 (79%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 61287 CTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGCG 61346
|| ||| || ||||| | ||||||||| |||| ||||| |||||| |||||||| ||
Sbjct 107115 CTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACG 107174
Query 61347 AACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 61406
||||| || || |||||||||||||||||||| |||||||| || ||||| | | ||
Sbjct 107175 TACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGC 107234
Query 61407 ATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61463
||| ||| ||||||| || ||||| ||||||||||| ||||||||||| ||
Sbjct 107235 ATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTCGAT 107291
>seq974
Length=31311
Score = 89.7 bits (98), Expect = 6e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 141933 TCCACACCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCACATCGGA 141992
|| ||||| ||| |||||||| || | ||| | || ||||| | ||||||||| ||
Sbjct 1 TCAACACCACGGTTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGG 60
Query 141993 TAATACGCTGTAGCAGCACCGCCGCGAATACCACCTTGAGAACAAGATTTTACTGCAGTT 142052
|| || || |||||||||||||| | || || ||||| || |||||||| || ||
Sbjct 61 TAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTC 120
Query 142053 TGGAAATGTTTCCAGAATGGAATA 142076
||||| || || |||| || |||
Sbjct 121 TGGAAGTGCTTATAGAACGGGATA 144
>seq895
Length=39754
Score = 82.4 bits (90), Expect = 8e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 61291 GTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61350
||||| || || | || || || |||| || || | ||||| | ||||| || ||
Sbjct 11880 GTAAACGTTCGCGAAATCACATCCTGCTGCTGCTCGCGCGTCAGGGCATTAAACCGCACC 11939
Query 61351 GCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61410
||||| || || || ||||||||||| | ||| || || || |||||| || |||||
Sbjct 11940 GCATAGCCCGAGACGCGGATGGTCAGGTTCGGGTAGTTCTCGGGATGCGCAATGGCATCG 11999
Query 61411 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61463
|| | || || || ||||||||||||||||| || || || |||||
Sbjct 12000 AGGAGCATCTCCCGGTTCATCACGTTAACGTTCAGGTGCTGCCCGCCCTCAAT 12052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 535277596130720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |