Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq1001 327 3e-85 >seq1001 Length=29257 Score = 327 bits (362), Expect = 3e-85 Identities = 674/994 (68%), Gaps = 40/994 (4%) Strand=Plus/Plus Query 24508 ATCGGCAAGGCCGGCAACAAAGGCACGCTCGCCCGCACGCTCGATGCCATCACCGACCAG 24567 ||||| || ||||| || ||||||||||| || | || | |||||| |||||||| Sbjct 6866 ATCGGTAAAGCCGGTAAAAAAGGCACGCTGGCAAAATCCCTGCAGGCCATCGCCGACCAG 6925 Query 24568 ACCAACCCGCTCACGGTCGTGGTGCGCGTCGCCGGCGGTGCTTCCGA------------- 24614 ||| ||| ||| || ||||||||||| | | |||| ||| Sbjct 6926 TGCAAACCGGTCATTGTGGTGGTGCGCGTTCCAGAAGGTGTCGACGACCCGGCAGACCCG 6985 Query 24615 -----GGCCGAGA------CCACGTCCAACCTGATCGGCGCCACCAACGCGGCCGGCCGG 24663 ||| ||| ||| |||||| | |||||| | ||| ||| |||| Sbjct 6986 GAAGCGGCGCAGAAAGAAACCATTTCCAACATCATCGGCACGACCGACGAAAACGGCAAA 7045 Query 24664 TACACCGGCATGAAGGCGTTGCTGGCCGCCCGCAACCGTTTT-GGCGTCGCGCCGCGCAT 24722 |||||||| |||| ||| || | | || |||||| ||||| ||||||||| Sbjct 7046 TACACCGGGCTGAAAGCGCTGTTAACGGCGAA-AACCGTCACCGGCGTTAAGCCGCGCAT 7104 Query 24723 CCTGGCTGTGCCGGGGCTCGACAGCCTGCCAGTCGGGACCGAGCTGG--TCACCATCGCG 24780 || | ||||||||||| || | | | ||| | ||||| ||| | ||| | | || Sbjct 7105 TCTCGGCGTGCCGGGGCTGGATACGCAGGAAGTGGCGACCGCGCTTGCGTCAACCT-GC- 7162 Query 24781 CAGAAGCTGCGCGCCTTCGCCTACCTGTCGGCGTACGGCTGCCAGACTAAGGAAGAGGCC 24840 |||| |||||||| |||| |||| | |||| |||||| |||| | || ||| Sbjct 7163 CAGAGCCTGCGCGCGTTCGGCTACGTAAGCGCGTGGGGCTGCAAGACCATTTCCGACGCC 7222 Query 24841 GTCGCCTATCGCAGTAACTTCGGCCAGCGCGAAGCGATGGTGATGTGGCCGGATTTCGTC 24900 || || || || ||| |||||||||| |||||| || || || || | Sbjct 7223 ATCAAATACCGTGAGAATTTCAGCCAGCGCGAGCTGATGGTCATTCACCCTGACTTTCTG 7282 Query 24901 GGCTGGGACACCGCCGCCAACGCCGAGACC-ACGCTG--TGGGCCACGGCCCGCGCGGTT 24957 | ||||||||| | || |||| | ||| | || ||||| || ||||||||| | Sbjct 7283 GCATGGGACACCACGGCGAACG---AAACCGATATTGCATGGGCGACCGCCCGCGCGCTC 7339 Query 24958 GGCTTGCGCGCCAAGATCGACAACGACACCGGCTGGCACAAGACGCTTTCCAACGTGGCT 25017 ||| |||||||||| |||||| | || ||||| |||||||| ||||| || ||||| | Sbjct 7340 GGCCTGCGCGCCAAAATCGACCAGGAGACCGGATGGCACAAAACGCTGTCTAACGTTGGC 7399 Query 25018 GTGGGTGGCGTGACTGGCCTGTC-GCGCGACGTTTTC-TGGGACCTCCAGGACCCGGCGA 25075 ||| |||||| || ||| ||| |||| || | || ||||| | ||||| | ||| | Sbjct 7400 GTGAATGGCGTCACCGGC--GTCAGCGCCTCGGTCTCATGGGATTTGCAGGAGCAGGCTA 7457 Query 25076 CCGACGCGGGCTACCTGAACGCCAACGAGGTGACCACGCTGGTTCACCGCGACGGCTACC 25135 ||||||| | ||||| || |||||| ||||| | | | |||||||| Sbjct 7458 CCGACGCCAACCTGCTGAATCAGGCCGGGGTGACAACGCTAATCCGCAACGACGGCTTTA 7517 Query 25136 GCTTCTGGGGCTCGCGCACGTGCAGCGCGGATCCGCTGTTCGCCTTCGAGAACTACACCC 25195 ||||||||| || || ||| | ||||| | |||| || || |||||||||| Sbjct 7518 AGTTCTGGGGCAACCGTACCTGCTCGGACGATCCTTTATTCGTGTTTGAAAACTACACCC 7577 Query 25196 GCACCGCCCAGGTGCTGGCCGACACCATGGCGGAAGCCCACATGTGGGCAAACGATCTGC 25255 |||| || ||||||||||||||||| |||||||| || ||| |||||| | || || Sbjct 7578 GCACGGCGCAGGTGCTGGCCGACACGATGGCGGAGGCGCACGCGTGGGCGATGGACAAGC 7637 Query 25256 CGATGACGCCGACGCTGGTCCGCGATCTGCTGGAGGGCATCAACGCCAAGCTGCGCATGC 25315 | | | | ||||| ||||||| | | | || ||||| ||||| | ||| || Sbjct 7638 CCGTTTCCGCAACGCTTATCCGCGACATTGTCGCCGGTATCAATGCCAAATTCCGCGAGC 7697 Query 25316 TGACCCGCAACGGCTACCTGCTGGGCGGCGCCGCGTGGTTCGACCCGGAAGCCAACACCA 25375 ||| |||||||| | | | ||| | |||| ||||||||| | |||||| Sbjct 7698 TGAAAAATAACGGCTATATCGTTGACGGGTCATGCTGGTACGACCCGGAGTCAAACACCG 7757 Query 25376 AGGACACGCTGAAGGCCGGCCAGCTCGCCATCGACTACGACTACACGCCCGTCCCGCCGC 25435 ||| || ||||| ||||| |||| ||||| ||||||||||| ||||||||||||| Sbjct 7758 TGGAAACCCTGAAAGCCGGGAAGCTGTATATCGATTACGACTACACCCCCGTCCCGCCGC 7817 Query 25436 TGGAAGACCTCACGTTCCGCCAGCGCATCACCGA 25469 ||||| |||| || | ||||||||||||||||| Sbjct 7818 TGGAAAACCTGACCCTGCGCCAGCGCATCACCGA 7851 Score = 291 bits (322), Expect = 2e-74 Identities = 886/1346 (66%), Gaps = 40/1346 (3%) Strand=Plus/Plus Query 19825 ATGGCAACCATCGACCTGTCACAGCTGCCGGCGCCGGCCGTGGTCGAAACGCTCGACTAC 19884 ||||||| | ||||| ||||| | ||||| | ||| || ||| || ||||| Sbjct 2715 ATGGCAATTGTTGACCTTAACCAGCTCGCCGCGCCTGACGTCGTGGAAGAACTGGACTAT 2774 Query 19885 GAAGCCATCCTGGCCGAGCGGAAAGACTACTTT-GTGTCGCTGTATCCCGCCGACCAGCG 19943 ||| |||||||| ||| || |||| | || | || ||||| || || | ||||||| Sbjct 2775 GAAACCATCCTGAGCGAACG-AAAGGCGACACTCGTCTCGCTATACCCGGAAGACCAGCA 2833 Query 19944 GGACGCCGTGCGCGC-CACGCTGGAGCTGGAATCCGAGCCGATCACCAAGCTCTTGCAGG 20002 |||||| | ||||| ||||||| ||| || ||||||||| | ||||| |||||| Sbjct 2834 GGACGCAAT-CGCGCGCACGCTGTCGCTTGAGTCCGAGCCGCTGGTGAAGCTGCTGCAGG 2892 Query 20003 AGAACGCCTACCGCGAGCTGGTGTGGCGCCAGCGCGTGAACGACGCGGCGCGCGGGGTCA 20062 | ||||||||||| || | | ||||| |||||||| ||||| || ||||| | ||||| Sbjct 2893 AAAACGCCTACCGGGAAGTTATCTGGCGACAGCGCGTCAACGAGGCCGCGCGTGCGGTCA 2952 Query 20063 TGCTGGCCTTCGCCGAAGGGGAAGACCTGGAGCAGATCGCGGCGAACTTCAACGTGCAGC 20122 ||||||||| ||| | ||| ||||| || ||||| | | || | |||||| ||| Sbjct 2953 TGCTGGCCTACGCTGCAGGAAGCGACCTTGACCAGATAGGCGGAAATTACAACGTTGAGC 3012 Query 20123 GCTTGACCATCACGCCGGCTGACGACACCACCGTGCCGCCGACGCCCGCCGTGATGGAGG 20182 || | ||||| || || |||||||| || | ||||||||||| |||||||||||| Sbjct 3013 GCCTTGTTATCACCCCTGCAGACGACACGACGTTACCGCCGACGCCTGCCGTGATGGAGT 3072 Query 20183 GCGACGACTCGCTGCGCGAGCGCGCA--CAGGAAGCGTTTGAAGGGCTGTCCGTGGCCGG 20240 ||| || || | || ||||| ||| | || ||||| |||||| || || Sbjct 3073 CGGAC-ACCGACTAC-CGTCTGCGCATTCAGCAGGCCTTTGAGGGGCTGAGTACCGCAGG 3130 Query 20241 CCCGACCAAGGCCTACGAGCAGTT---CGCGCGCTCGGCTGACGGCCGGGTGGCGGACGC 20297 | | ||| | || | | ||||| || ||| |||||||| ||||| || || Sbjct 3131 CTCTACC---GGCTCCTATCAGTTTCACGGTCGCAGCGCTGACGGGCGGGTCGCCGATAT 3187 Query 20298 GCGCGCGATCAG-CCCG-GCCGGCGCGGAAGTGGTGGTCTCGGTGCTGTCGCACCTGAAC 20355 | ||||| |||| || ||| | ||| || ||||||| || | | || Sbjct 3188 TTCGGTCATCAGTCCCGAACCTGCGTG--CGTGACCGTTACGGTGCTTTCCCGCGAAAAT 3245 Query 20356 GACGGC---ACGGCAGACGAGAGCCTGCTGGCGACTGTACGCACCGCGTTGAGCGATGAC 20412 ||||| || | |||||| ||||| | || |||| |||| ||| |||||| Sbjct 3246 AACGGCGTGGCGTCTGACGAG---CTGCTCAACATCGTGCGCAACGCGCTGAACGATGAA 3302 Query 20413 GATACCCGGCCGCTCGGCGACCGTCTGACGGTGCAATCCGCCACCATCGTCCCGTACCGC 20472 || | ||||| ||| ||||| |||| |||| || || | ||| || || Sbjct 3303 GACGTCAGGCCGGTCGCTGACCGCGTGACCCTGCAGTCGGCGAACATTATCGACTATAAA 3362 Query 20473 ATCCGTGCCACGCTGTACCTGGCATCGGGGCCGGCGGCCGAGCCGATCCTGGACGCGGCT 20532 ||| || |||| ||||| | || || | |||||| | || || || Sbjct 3363 ATCACCGCGTCGCTTTACCTTTACCCCGGTCCCGAAAGCGAGCCTGTGCTCAGTGCTGC- 3421 Query 20533 GGCAAGC-GGGCTG-ACACTTACCGCACCACGCGCCGGCGCATCGGCCGCGACATCAACC 20590 | |||| |||| | | || |||| ||| | || |||| ||||| ||| | Sbjct 3422 -GAAAGCAAAGCTGCAGGCGTATATCACCGCGCAGCACCGGCTCGGGCGCGATATCCGCA 3480 Query 20591 GCTCGGCGATCACGGCGGCACTACATGTGGAGGGCGTGGAAAAGCTGGTGCTGCATGAAC 20650 ||||| || || || || ||||| ||||||||| | | | |||| |||| Sbjct 3481 AATCGGCCATTTATGCCGCGCTCCATGTTGAGGGCGTGCAGCGCGTCGAGCTGGCCGAAC 3540 Query 20651 CGGCCGAAGACATCGCGCTCGATCTGACACAGGCGGGCTACTGCACCGGCGTGGATATCG 20710 ||| | ||||||| |||||| ||||| ||| | |||| || | | || Sbjct 3541 CGGTGGCCGACATCGTTCTCGATGACACACAAGCGTCATGGTGCAGCGACTACGCCGTCA 3600 Query 20711 TCAACGGGGGCACCAGTGAGTAGCGCAACCCTGTTgccgccgaacgcgacgccgctggag 20770 || ||||||| | ||| | | |||| ||||| | | || | ||||| ||| Sbjct 3601 CCATAGGGGGCAACGATGAATGATACCCGCCTGCTGCCGGTGGGCTCGTCACCGCTTGAG 3660 Query 20771 --cgccgcgccgcgcagacgggcgcacgcatcgaacgcgTGCCGGTGCCGCTGCGCGACC 20828 || ||| ||||| | |||| || ||| || || |||||||| | Sbjct 3661 GTGGCGGCGGCGCGC--GCCTGCGCTGAGATTGAAAATACCCCCGTTCCGCTGCGTCGTC 3718 Query 20829 TGTGGAACCCAGCCACCTGTCCGGCCGAGCTGTTGCCCTTCCTGGCCTGGTCGTTTTCCG 20888 | |||| || | | ||| ||||| | ||| |||| | ||||| ||| ||||||||| Sbjct 3719 TCTGGAGTCCTGACGACTGCCCGGCAAATCTGCTGCCGTGGCTGGCGTGGGCGTTTTCCG 3778 Query 20889 TGGACCGCTGGAACCCTTCCTGGCCGCTCGCCACCAAGCGCGCCGTGACGGCCGCCTCCT 20948 | ||||||||| || ||||||| ||||| ||||| | |||| ||| | | Sbjct 3779 TTGACCGCTGGGACGAGAACTGGCCGGAGGCCACAAAGCGGGATGTGATCCGCGCGGCGT 3838 Query 20949 ACTTCGTGCA-CCGCAAGAAGGGCACGATCGGCGCGCTTCGCCGCGCGGTGGAGCCGCTG 21007 || | || ||| | || || ||||| || || | ||||||| ||||||||| || Sbjct 3839 GGTTTATCCATGCGC-ACAAAGGAACGATTGGGGCAGTGCGCCGCGTGGTGGAGCCCCTC 3897 Query 21008 GGCTACCTGATTCGCGTCATCGAGTGGTGGCAGACCAACCCGCCCGGGCCGCGCGGGTCG 21067 |||||||||||| ||| ||||||||| | ||||| || || | ||| || Sbjct 3898 GGCTACCTGATTAACGTGTCGGAGTGGTGGGAAACCAA------CGACCCACCCGGCACG 3951 Query 21068 TTCCGGCTCGATGTGGGCGTGCTGCAAACCGGCATCGACGAGGCCATGTATGCCGAGCTG 21127 || || |||||| | || ||| | | ||||||||| ||||| |||||| |||| || Sbjct 3952 TTTCGCCTCGATATCGGTGTGTTAGAGACCGGCATCACCGAGGAAATGTATTACGAGATG 4011 Query 21128 GAACGCCTCATTGACGACGCCAAGCC 21153 || || ||||||| ||| || ||||| Sbjct 4012 GAGCGGCTCATTGCCGATGCAAAGCC 4037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127882075574192