Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq197 125 2e-23 >seq197 Length=620651 Score = 125 bits (138), Expect = 2e-23 Identities = 164/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || ||||| || |||||| ||||||| ||| ||| ||| Sbjct 448586 CAGATCTTTGTCAAGACTCTGACGGGAAAGACCATCACTCTGGAAGTTGAAGCTTCAGAC 448527 Query 206233 A-CAGTC-GAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 | || | |||| || ||||| || ||| ||||| ||||| |||||| || ||| Sbjct 448526 ATCATTGAGAAT--GTCAAAGCCAA-GATCCAAGACAAAGAGGGAATTCCCCCAGACCAG 448470 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || | ||||||||||| || ||| | || ||||| | || ||| |||| |||||| Sbjct 448469 CAGAGGTTGATCTTCGCCGGCAACCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 448410 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | ||||| |||||||| || || ||||||||| | || || Sbjct 448409 ATTCAGAAGGAGTCTACCCTCCATCTTGTTTTGCGTCTGCG 448369 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| ||||||| ||| ||| ||||| |||| Sbjct 446917 AAAACCCTAACTGGCAAGACAATCACTCTGGAAGTTGAAGCTTCAGACACCATCGAGAAT 446858 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| || || ||| || ||||||||||| Sbjct 446857 GTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAGCAGCGACTTATCTTC 446798 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || | ||||| || | || ||| | || || || ||||||||||||| Sbjct 446797 GCCGGTAAACAACTAGAAGACGGCCGTACATTGTCAGACTATAATATCCAGAAAGAGTCG 446738 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| | || ||| | || || Sbjct 446737 ACTCTTCACTTGGTATTGCGTCTGCG 446712 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| ||||||||||| ||| ||||| |||| Sbjct 449074 AAAACCCTAACTGGCAAGACAATCACTCTGGAAGTGGAAGCTTCAGACACCATCGAGAAT 449015 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| || || ||| || ||||||||||| Sbjct 449014 GTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAGCAGCGACTTATCTTC 448955 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || | ||||| || | || ||| | || || || ||||||||||||| Sbjct 448954 GCCGGTAAACAACTAGAAGACGGCCGTACATTGTCTGACTATAATATCCAGAAAGAGTCA 448895 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || ||| | || || Sbjct 448894 ACCCTTCACTTGGTATTGCGTCTGCG 448869 Score = 107 bits (118), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || |||||| ||||||| ||| ||| ||||| |||| Sbjct 446461 AAGACTCTGACGGGAAAGACCATCACTCTGGAAGTTGAAGCTTCGGACACCATCGAGAAT 446402 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || || || ||| || ||| || | || |||||| Sbjct 446401 GTAAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTCATCTTC 446342 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| |||| ||||| | || ||| |||| |||||| |||| || ||||| Sbjct 446341 GCCGGTAAACAGCTGGAGGATGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAGTCC 446282 Query 206365 ACTCTTCACCTTGTTTT 206381 || |||||| | || || Sbjct 446281 ACCCTTCACTTGGTATT 446265 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || || || || || ||||| ||||||||||| || || | | ||| Sbjct 449789 CAGATATTCGTGAAGACCCTGACTGGGAAAACCATCACTTTGGAGGTCGAGCCTGCAGAC 449730 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || ||||| || || ||| ||| || Sbjct 449729 ACCATCGAGAACGTTAAGGCGAAGATCCAGGACAAAGAGGGCATCCCGCCCGACCAGCAG 449670 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| | ||||| || | || ||| |||| |||||| || Sbjct 449669 CGTCTCATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACCTTGTCCGACTACAACATC 449610 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||||| || || ||| | || || | || ||| Sbjct 449609 CAGAAAGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGA 449571 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || || || ||||||||||| || |||||| | || Sbjct 449549 AAAACCCTGACTGGCAAGACAATTACCCTGGAAGTGGAAGCCTCAGACACAATTGAGAAT 449490 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| ||||| |||||| || ||| || || | ||||| Sbjct 449489 GTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAGCAGAGGTTGATCTTT 449430 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || |||||||| ||||| | || || | || |||||| ||||||||||||| Sbjct 449429 GCAGGCAAACAGTTGGAGGATGGCCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCC 449370 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||| | || || | || ||| Sbjct 449369 ACCCTGCACTTGGTGCTGCGTCTGCGA 449343 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| || | ||||||||| ||||||||||||| ||||||||| | ||| || Sbjct 446712 CGCAGACGCAATACCAAGTGAAGAGTCGACTCTTTCTGGATATTATAGTCTGACAATGTA 446771 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | || ||||| || || || |||||||||||||| || || || Sbjct 446772 CGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTG 446815 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| || | |||||| || ||||||||||||| ||||||||||| ||| || Sbjct 447396 CGCAGACGCAATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCAGACAATGTA 447455 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | || ||||| || || || |||||||||||||| || || || Sbjct 447456 CGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTG 447499 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| || | |||||| || ||||||||||||| ||||||||||| ||| || Sbjct 448869 CGCAGACGCAATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCAGACAATGTA 448928 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | || ||||| || || || |||||||||||||| || || || Sbjct 448929 CGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTG 448972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181793635110274