Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq974 187 3e-42 seq236 156 5e-33 seq962 138 1e-27 seq637 109 6e-19 seq754 87.8 2e-12 >seq974 Length=31311 Score = 187 bits (206), Expect = 3e-42 Identities = 255/356 (72%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 41180 CCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTG 41239 |||||||| || ||| |||| ||||| || || || |||||||| | |||||| || Sbjct 356 CCTACGCCAATCATGTCTGGCGTGCGCACCCCAACCCGTCAGTTCAGCTCCTGCGTACTG 297 Query 41240 ATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTGAAGTAT 41299 || || | ||||| ||||| ||| | || || || || |||||||| || Sbjct 296 ATCGAGTGTGGTGACAGCCTGGATTCCATCAACGCCACGTCCAGCGCCATCGTGAAATAC 237 Query 41300 ATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCTAAA 41359 |||| || ||||| |||||||| | || || || | ||| || || |||| Sbjct 236 GTTTCCCAGCGTGCCGGTATCGGCATCAACGCCGGTCGCATCCGTGCGCTGGGCAGCCCG 177 Query 41360 ATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATTCAGACA 41419 || || || ||||||||| | || || ||| |||||||||| || || | ||||| Sbjct 176 ATTCGCGGCGGTGAAGCATTCCACACCGGCTGTATCCCGTTCTATAAGCACTTCCAGACG 117 Query 41420 GCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTATCCG 41479 ||||| |||||||| || || || ||||| || || |||||||| || ||| || || Sbjct 116 GCGGTAAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCT 57 Query 41480 ATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGA 41535 || ||||| ||||||| |||| ||||||||| |||||||||||| |||||||| Sbjct 56 ATGTGGCACCTGGAAGTGGAAAGCCTGCTGGTCCTGAAAAACAACCGTGGTGTTGA 1 >seq236 Length=545527 Score = 156 bits (172), Expect = 5e-33 Identities = 146/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 51018 GTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGAAAGATGCT 51077 || |||||||| |||||||| ||||| || || || || |||||||| |||| || || Sbjct 30710 GTGGAAGGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCG 30769 Query 51078 GTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGC 51137 || | || || || || ||||| ||| | || || ||||| || |||||||| || ||| Sbjct 30770 GTTGAGCACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGC 30829 Query 51138 TTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGC 51197 || || | ||||| |||||||| ||||||||||||||||| | |||||||| |||||| Sbjct 30830 TTCAACTCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGAAAGC 30889 Query 51198 ATGTAA 51203 ||||| Sbjct 30890 CTGTAA 30895 >seq962 Length=32987 Score = 138 bits (152), Expect = 1e-27 Identities = 254/368 (69%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 154259 CAACGAGAACGCGAACAAAGACGCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGG 154318 ||| || ||||| ||||||||| | || |||| || |||||||||||| |||| || Sbjct 25741 CAATGAAAACGCCAACAAAGACAGTAAAGTGATCCCCACCCAGCGCGATCTGCTGGCCGG 25682 Query 154319 TATCGTAGCGAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGCA 154378 |||||| || ||||||| || ||| | ||| | || || | | || |||||| Sbjct 25681 TATCGTCGCCAAACACTATGCCCGTCAGCACCTGCTGCCGCGCGATGTGGTCTCAGCGCA 25622 Query 154379 TGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCC-ATACACAA 154437 || ||||| ||||| ||||| ||||| || || |||||| || || ||| Sbjct 25621 CGAGCGCGGTGAGATCCACTATCACGATCTCGACTATTCACCGTTCTTCCCGATGTTCAA 25562 Query 154438 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 154497 ||| ||| | || ||||||| |||||| | | || || || ||||||||||| | Sbjct 25561 -CTGTATGCTGATTGACCTGAAAGGCATGCTGACCCACGGGTTTAAAATGGGTAACGCCG 25503 Query 154498 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 154557 | || ||||| || ||||| ||| || ||||| | | ||||||||| | ||| | Sbjct 25502 AGATTGAACCGCCAAAATCCATCTCCACCGCCACTGCGGTCACGGCACAGATTATCGCCC 25443 Query 154558 AGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAACG--TTGATAAAGTGCTGGC 154615 || | || ||| |||||||| || ||| || || || |||| |||||||||| Sbjct 25442 AGGTCGCCAGCCACATTTACGGCGGCACCACCATT--AACCGCATTGACGAAGTGCTGGC 25385 Query 154616 TCCGTATG 154623 |||| || Sbjct 25384 CCCGTTTG 25377 >seq637 Length=122170 Score = 109 bits (120), Expect = 6e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 51021 GAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGAAAGATGCTGTG 51080 |||||||| |||||||| |||||||| || | || |||| ||| ||||| || Sbjct 107288 GAAGGTGGTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGCGATG 107229 Query 51081 AAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTT 51140 ||||||||||||| || || ||| | || ||||| || || || || ||||| || ||| Sbjct 107228 GAACATCCTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACGTTTT 107169 Query 51141 AATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATG 51200 || | |||||| |||||| |||| ||||||||| || | || || || | |||| Sbjct 107168 AACTCCCTGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCACTCAGTCCATG 107109 Query 51201 TAA 51203 ||| Sbjct 107108 TAA 107106 >seq754 Length=71200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 197/296 (67%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 40060 AACGAACTGAAAACCACACCAGACGATCGCGGGATCATCGTTTCCGCATGGAACCCTGTT 40119 ||| | ||||||| | |||||| ||| | ||||| |||||||| |||||| | Sbjct 66364 AACCAGCTGAAAAACGATCCAGACTCGCGCCGAATCATTGTTTCCGCCTGGAACGTCGGC 66423 Query 40120 GATCTGGATAAAATGGCATTGCGTCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAAC 40179 || ||||| |||||||| || ||||| ||| |||||||||||| ||| || Sbjct 66424 GAGCTGGACAAAATGGCGCTGGCACCGTGCCACGCGTTCTTCCAGTTCTACGTCGCTGAC 66483 Query 40180 GGTAAACTGTCTCTACAGTGGTATCAGCGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTC 40239 || || || || ||| || |||||||| |||||| ||| | || ||||||| Sbjct 66484 GGAAAGCTCTCCTGCCAGCTCTACCAGCGTTCCTGTGATGTGTTCCTCGGCCTGCCGTTT 66543 Query 40240 AATATCGCCTCCTACGCTCTCCTGACGCATATTATCGCTGATATTTGCGGGTACGAAGTA 40299 || || ||| ||| || || | ||||| || || | || | ||||| Sbjct 66544 AACATTGCCAGCTATGCGCTGTTAGTCCATATGATGGCGCAGCAGTGTGACCTGGAAGTG 66603 Query 40300 GGTGATCTGGTTTGGACAGGTGGTGATGTCCATATCTACAAAAACGCAATCGAGCA 40355 || ||| | || ||||| ||||| || |||| |||||| ||| || ||||| Sbjct 66604 GGGGATTTTGTCTGGACCGGTGGGGACACCCATCTCTACAGCAACCATATGGAGCA 66659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570006417319440