Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_025425.1 Length=163424 Score E Sequences producing significant alignments: (Bits) Value seq236 167 2e-36 seq974 129 6e-25 seq637 125 7e-24 >seq236 Length=545527 Score = 167 bits (184), Expect = 2e-36 Identities = 143/177 (81%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 53990 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 54049 ||| ||||||||||||||||||||||| |||||||| ||||| |||||| |||||||| Sbjct 30886 TTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGAGTTGAAGCG 30827 Query 54050 CACTGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 54109 || || |||||||| |||||||| || ||||||||||| || || || || ||||| || Sbjct 30826 TACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTGCTCAACCGC 30767 Query 54110 GTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCACCTTCGAC 54166 ||||| || | |||| || || |||||| || || | ||||| |||||||| || Sbjct 30766 GTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACCTTCCAC 30710 >seq974 Length=31311 Score = 129 bits (142), Expect = 6e-25 Identities = 246/357 (69%), Gaps = 8/357 (2%) Strand=Plus/Plus Query 135415 TTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTC 135474 ||||| || | || | ||| ||||| | || | |||||||| ||||| | || ||| Sbjct 13 TTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGGTAGAACAGGGTC 72 Query 135475 GCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTC 135534 || || ||||| || | ||||| || ||||| || || || || ||||| || || || Sbjct 73 GCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTCTGGAAGTGCTTA 132 Query 135535 CAGAATGGGATAACGCCAGTATGACGAA--CTTCACCATGCC-CGATCTTAGAT-CCTTC 135590 |||| |||||| ||| || || ||| ||||||| ||| ||| | | || Sbjct 133 TAGAACGGGATACAGCCGGTGTG--GAATGCTTCACC--GCCGCGAATCGGGCTGCCCAG 188 Query 135591 CGCGCGAATCATGCCAGCGTTGATACCGATACCCGCACGCTTGCTAATATACTTGATGAT 135650 ||| || || || |||||||| |||||||| ||||||| | || || || | ||| Sbjct 189 CGCACGGATGCGACCGGCGTTGATGCCGATACCGGCACGCTGGGAAACGTATTTCACGAT 248 Query 135651 TGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACACGA 135710 || | | || |||||||| | || |||| ||| || |||| || || || Sbjct 249 GGCGCTGGACGTGGCGTTGATGGAATCCAGGCTGTCACCACACTCGATCAGTACGCAGGA 308 Query 135711 ACTAAATTGGCGTGTTGGGGTACGCACACCAGCCATAATCGGAGTAGGCAGAGAGAT 135767 || || || || |||||||| ||||| |||| ||| || || ||||||||||| || Sbjct 309 GCTGAACTGACGGGTTGGGGTGCGCACGCCAGACATGATTGGCGTAGGCAGAGAAAT 365 >seq637 Length=122170 Score = 125 bits (138), Expect = 7e-24 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 53994 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCGCACT 54053 || || ||||| | ||||||||| ||||||| ||| |||||| || || || ||| Sbjct 107119 GTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACGTACT 107178 Query 54054 GCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTCC 54113 ||||| ||||| || || || || ||||| || || |||||||||||||| | || || Sbjct 107179 GCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGCATCG 107238 Query 54114 AGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCACCTTCGA 54165 |||| |||||| || || |||||| || |||| ||||| |||||||||| Sbjct 107239 AGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTCGA 107290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522817075564160