Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_025434.1 Length=62699 Score E Sequences producing significant alignments: (Bits) Value seq997 297 8e-76 >seq997 Length=29618 Score = 297 bits (328), Expect = 8e-76 Identities = 369/503 (73%), Gaps = 13/503 (3%) Strand=Plus/Minus Query 25507 GTTCTGGCGCTG--ATTGCCGCAGGGGCTTCTGCGCCTGAAATCCTGGATCAGTTTCTGG 25564 ||||||| |||| |||| || || ||| |||| | | ||| || |||||||||||| Sbjct 20895 GTTCTGGGGCTGGTATTG--GCTGGTGCTCCTGCATCCGTAATTCTCGATCAGTTTCTGA 20838 Query 25565 ATGAAAAAGAAGGTAACCACACCACGGCATACCGTGATGGTGCGGGGATCTGGACCATCT 25624 |||||||||| |||||| | |||||| ||| ||||||| || || ||||| || | Sbjct 20837 ATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGACTATTT 20778 Query 25625 GCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTGATTCCTGGCATGAAGCTGTCGAAGG 25684 |||| || || || ||| ||| |||| || || | | |||||||| || | ||| Sbjct 20777 GCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGACACAGG 20718 Query 25685 AAAAATGCGACCGGGTTAACGCTATCGAACGGGATAAGGCGCTGGCATGGGTGGAGAAAA 25744 |||||| | | ||| || ||||||||||| ||||||| ||||||||||| || | Sbjct 20717 CCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGACCGCA 20658 Query 25745 ACATCAAAGTGCCACTGACTGAACCCCAGAAAGCGGGTATTGCGTCATTCTGTCCTTACA 25804 | || || || || || ||||| |||||||| || || || || |||||||| |||| Sbjct 20657 ATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCCGTACA 20598 Query 25805 ACATTGGCCCGGGTAAGTGTTTCCCGTCGACGTTTTATAAACGAATTAATGCAGGAGATC 25864 |||| || ||||||||||| |||||||| ||||| ||||| || || ||||| || || | Sbjct 20597 ACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGGTGACC 20538 Query 25865 GAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGACGGTGGCAGGGACTGCCG-- 25922 | || || ||||| || |||||||||||||||| |||| |||| | |||||||| Sbjct 20537 GCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTGCCGCC 20478 Query 25923 ----TATTCGCTCAAATAA---CTGTTATGGTCAGGTATCCCGTCGTGACCAGGAGAGCG 25975 || || || || ||| || ||||||||| || || |||||||| || | Sbjct 20477 TGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGAAAGTG 20418 Query 25976 CGCTGGCGTGCTGGGGAATCGAC 25998 | ||||||||||||| || ||| Sbjct 20417 CTTTGGCGTGCTGGGGGATAGAC 20395 Score = 125 bits (138), Expect = 3e-24 Identities = 265/400 (66%), Gaps = 24/400 (6%) Strand=Plus/Minus Query 27077 AATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGATAAAGCCACAT----- 27131 || || || || || ||||||||| |||||||||||||||||||||||||||| Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAA 18126 Query 27132 ----------------CCATCATCGATGATATGCAGAAGCGGCAACGTGATGTAGCAGAA 27175 ||| |||| | || ||||||| || || ||||||| || | Sbjct 18125 CTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCG 18066 Query 27176 CTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAATGCGACTATCGAAAGTCTCCGT 27235 || || |||| |||||| || | |||||||| || | | || || |||| | | Sbjct 18065 CTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCAT 18006 Query 27236 GCTGATGTTTCTGCTGGTCGTAAGCGCCTGCAAGTCGCCGCCACCTGT---GCAAAGTCA 27292 ||||| |||||| |||||||| ||||| || ||| | |||| || || | Sbjct 18005 AGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCGCGAACGGA 17946 Query 27293 ACGACCGGAGCCAGCAGCATGGGCGATGGAGAAAGCCCAGGACTTACAGCAGATGCTGAA 27352 ||||||| || || |||||||||||| |||| ||||||| | |||||| Sbjct 17945 GCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGACTCCGCTGAA 17886 Query 27353 CTCAATTATTACCGTCTCAGAAGTGGAATCGACAAGATAACCGCGCAGGTTAACTACCTG 27412 | |||||| | ||||||| |||||| || | || |||||| ||| ||| Sbjct 17885 CGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTCGGCTATCTG 17826 Query 27413 CAGGAATACATCAGGACGCAATGCCTGAAATAAttttttt 27452 ||| | ||||| || || || ||| | |||||| ||||| Sbjct 17825 CAGAACTACATAAGCACTCAGTGCTTAAAATAAAGTTTTT 17786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200507615930440