Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_025437.1
Length=169062
Score E
Sequences producing significant alignments: (Bits) Value
seq236 196 5e-45
seq637 149 7e-31
seq895 82.4 8e-11
>seq236
Length=545527
Score = 196 bits (216), Expect = 5e-45
Identities = 157/188 (84%), Gaps = 1/188 (1%)
Strand=Plus/Minus
Query 62324 AGCCATTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTC 62383
|||| ||| || || |||||||||||||| ||||||||||| ||||||||||| || |||
Sbjct 30899 AGCC-TTACAGGCTTTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTC 30841
Query 62384 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCT 62443
|||||||| ||||| || |||||||| || || || ||||||| |||||| |||||||||
Sbjct 30840 AGAGAGTTGAAGCGTACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCT 30781
Query 62444 GGATGCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGA 62503
|| |||| ||| || || ||| ||||| || ||||| ||||| ||||| ||||| |||
Sbjct 30780 GGGTGCTCAACCGCGTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGA 30721
Query 62504 CCACCTTC 62511
||||||||
Sbjct 30720 CCACCTTC 30713
>seq637
Length=122170
Score = 149 bits (164), Expect = 7e-31
Identities = 139/177 (79%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 62338 CTCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 62397
|| ||| || ||||| | ||||||||| |||||||||| |||||| |||||||| ||
Sbjct 107115 CTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACG 107174
Query 62398 AACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTAACTGC 62457
||||| || || |||||||||||||||| ||| |||||||| || ||||| | | ||
Sbjct 107175 TACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGC 107234
Query 62458 ATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 62514
||| ||| ||||||| || ||||| ||||||||||| ||||||||||| ||
Sbjct 107235 ATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTCGAT 107291
>seq895
Length=39754
Score = 82.4 bits (90), Expect = 8e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 62342 GTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62401
||||| || || | || || || ||||||| || | ||||| | ||||| || ||
Sbjct 11880 GTAAACGTTCGCGAAATCACATCCTGCTGCTGCTCGCGCGTCAGGGCATTAAACCGCACC 11939
Query 62402 GCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTAACTGCATCT 62461
||||| || || || |||||||||| | ||| || || || |||||| || |||||
Sbjct 11940 GCATAGCCCGAGACGCGGATGGTCAGGTTCGGGTAGTTCTCGGGATGCGCAATGGCATCG 11999
Query 62462 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 62514
|| | || || || ||||||||||||||||| || || || |||||
Sbjct 12000 AGGAGCATCTCCCGGTTCATCACGTTAACGTTCAGGTGCTGCCCGCCCTCAAT 12052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 540858270981280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |