Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_025446.1 Length=157308 Score E Sequences producing significant alignments: (Bits) Value seq974 86.0 6e-12 >seq974 Length=31311 Score = 86.0 bits (94), Expect = 6e-12 Identities = 242/365 (66%), Gaps = 10/365 (3%) Strand=Plus/Minus Query 4038 TCTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGT 4097 ||| || || || |||||||| ||||| || ||||||||||| || ||||| || || || Sbjct 360 TCTGCCTACGCCAATCATGTCTGGCGTGCGCACCCCAACCCGTCAGTTCAGCTCCTGCGT 301 Query 4098 TCTTATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGA 4157 || ||| | ||||||| |||| || ||||| || || ||| || || | Sbjct 300 ACTGATCGAGTGTGGTGACAGCCTGGATTCCATCAACGCCACGTCCAGCGCCATCGTGAA 241 Query 4158 TTATGTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAG 4217 || || ||| | || || || ||||| | | | ||| || |||| | || || Sbjct 240 ATACGTTTCCCAGCGTGCCGGTATCGGCATCAACGCCGGTCGCATCCGTGCGCTGGGCAG 181 Query 4218 CCCTATCCGAAAAGGTGAAATGGTGCACACAGGTCTGGTTCC--TTTCATAA--AATATC 4273 ||| || || |||||| | ||||| || ||| ||| || |||| | | | Sbjct 180 CCCGATTCGCGGCGGTGAAGCATTCCACACCGG-CTGTATCCCGTTCTATAAGCACTTCC 122 Query 4274 TGACTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGC-AACTTGC 4332 ||| ||| |||| || |||||||| ||||| | || ||||| | || | | || Sbjct 121 AGAC---GGCGGTAAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGT 65 Query 4333 TATATCCCTATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGT 4392 | || |||||| ||||| || | || | |||||||||| |||||||||||| Sbjct 64 TCTA-CCCTATGTGGCACCTGGAAGTGGAAAGCCTGCTGGTCCTGAAAAACAACCGTGGT 6 Query 4393 CTTGA 4397 |||| Sbjct 5 GTTGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503246314448320