Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_025449.1
Length=166783
Score E
Sequences producing significant alignments: (Bits) Value
seq236 196 5e-45
seq637 150 2e-31
seq895 89.7 5e-13
>seq236
Length=545527
Score = 196 bits (216), Expect = 5e-45
Identities = 153/183 (84%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 60225 TTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 60284
||||| || || ||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 30895 TTACAGGCTTTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGA 30836
Query 60285 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 60344
||| ||||| || |||||||| || || || |||||||||||||| |||||||| || ||
Sbjct 30835 GTTGAAGCGTACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTG 30776
Query 60345 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 60404
|| ||| || || ||| ||||| || ||||| ||||| ||||| ||||| ||||||||
Sbjct 30775 CTCAACCGCGTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACC 30716
Query 60405 TTC 60407
|||
Sbjct 30715 TTC 30713
>seq637
Length=122170
Score = 150 bits (166), Expect = 2e-31
Identities = 137/173 (79%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 60238 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60297
|| || ||||| | ||||||||| |||||||||| |||||| |||||||| || |||
Sbjct 107119 GTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACGTACT 107178
Query 60298 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60357
|| || || |||||||||||||||||||| |||||||| || ||||| | | |||||
Sbjct 107179 GCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGCATCG 107238
Query 60358 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 60410
||| ||||||| || ||||| ||||||||||| ||||||||||| ||
Sbjct 107239 AGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTCGAT 107291
>seq895
Length=39754
Score = 89.7 bits (98), Expect = 5e-13
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 60237 GGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 60296
|||||| || || | || || || ||||||| || | ||||| | ||||| || ||
Sbjct 11879 GGTAAACGTTCGCGAAATCACATCCTGCTGCTGCTCGCGCGTCAGGGCATTAAACCGCAC 11938
Query 60297 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 60356
||||| || || || ||||||||||| | ||| || || || |||||| || |||||
Sbjct 11939 CGCATAGCCCGAGACGCGGATGGTCAGGTTCGGGTAGTTCTCGGGATGCGCAATGGCATC 11998
Query 60357 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 60410
|| | || || || ||||||||||||||||| || || || |||||
Sbjct 11999 GAGGAGCATCTCCCGGTTCATCACGTTAACGTTCAGGTGCTGCCCGCCCTCAAT 12052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 533565634522320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |