Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_026014.1
Length=35814
Score E
Sequences producing significant alignments: (Bits) Value
seq1001 542 6e-150
seq1047 109 1e-19
>seq1001
Length=29257
Score = 542 bits (600), Expect = 6e-150
Identities = 905/1302 (70%), Gaps = 12/1302 (1%)
Strand=Plus/Plus
Query 22145 CTGCCCGGTGCACCTGCTGCCTTATCTCGCCTGGGCGTTTTCCGTTGACCGCTGGGATCG 22204
|||||||| | |||||||| | || || ||||||||||||||||||||||||||
Sbjct 3735 CTGCCCGGCAAATCTGCTGCCGTGGCTGGCGTGGGCGTTTTCCGTTGACCGCTGGGACGA 3794
Query 22205 CAACTGGCCGGAAGAGACAAAGCGACAGGTTATTCGTGATGCATGGCTGATACACCGACA 22264
||||||||||| | |||||||| | || || || | || ||| | || || ||
Sbjct 3795 GAACTGGCCGGAGGCCACAAAGCGGGATGTGATCCGCGCGGCGTGGTTTATCCATGCGCA 3854
Query 22265 CAAAGGGACCATCAGCGCACTGCGCCGGGCCATTGAGCCGCTGGGATACCTCATTCGCGT 22324
|||||| || || | ||| ||||||| | | ||||| || || ||||| ||| |||
Sbjct 3855 CAAAGGAACGATTGGGGCAGTGCGCCGCGTGGTGGAGCCCCTCGGCTACCTGATTAACGT 3914
Query 22325 GTCTGAGTGGTGGGAGTTCGGCGGAGAACCGGGAACATTTACCGTTGAAGTCGGCACGCT 22384
||| ||||||||||| | || ||| || || ||| | | || |||| | |
Sbjct 3915 GTCGGAGTGGTGGGAAACCAACGACCCACCCGGCACGTTTCGCCTCGATATCGGTGTGTT 3974
Query 22385 GGACAGTGGCGTGACGGAGGAAATGTATCTGGAAATGGAGCGGTTGATTGCTGATGCCCG 22444
|| | ||| | || |||||||||||| || ||||||||| | ||||| |||||
Sbjct 3975 AGAGACCGGCATCACCGAGGAAATGTATTACGAGATGGAGCGGCTCATTGCCGATGCAAA 4034
Query 22445 CCCGGTCAGCCGCCACATGACAGGGCTGAATATCATTCAGGAAATTCCGGGGGATATTTT 22504
|| | ||| ||||| | | || || || || |||||||| | ||||| |||| |
Sbjct 4035 GCCAGCCAGTCGCCATCTTATCGGCCTCAACATTATTCAGGATGTGCCGGG--ATATCTG 4092
Query 22505 CGCAGCGGCG-GCA-ACTTATGACGGTGAAGTTATTACCATTTATCCAGGCGATTAAGCA 22562
|| ||||| || || |||||||| || || || |||| || | ||||
Sbjct 4093 TACACCGGCGCGCTGACGTATGACGGCGACACCATCACGGTTTACCCGGA----TAAGTG 4148
Query 22563 TGAGTACCACAACACGAAAATTTAAAACCGTTATCACCGATACGGGTGCaaaaaaaTTAG 22622
|| |||| ||| ||||| |||||| || |||||| | | ||||| | || | |
Sbjct 4149 AGAACACCATGACAGTAAAATATAAAACGGTCATCACCAAAGCCGGTGCGATTAAGCTTG 4208
Query 22623 CTCAGGCAGCCGCGCCAGATGGTAAGCCTGTCCGCCTGACTCATATGGCAGTGGGCGACG 22682
|| || ||| || | || || || | || ||||| | |||||||
Sbjct 4209 CTGCAGCGACCGTCCCGAACGGGAAAAAAGTGAATTTTACGGCGATGGCCATCGGCGACG 4268
Query 22683 GTGGCGGCACGTTGCCCACACCAGACAGTAAGCAGACCCGTCTGGTGCATGAGGTGTGGC 22742
|||||||||| ||||| || || | ||||| || | |||| || ||||
Sbjct 4269 GTGGCGGCACATTGCCGGTGCCTGATGCCAGCCAGACAAAGCTCATCAATGAAGTCTGGC 4328
Query 22743 GACATACTGTTAATCGCGTCATCCTGGACGCAACA--CATCAGAACCGCATTATTGCGGA 22800
| ||||| | || ||| ||||||| |||| ||||| ||| | || || ||
Sbjct 4329 GCCATACGCTGAACAAAATCAGCCTGGAC--AACAAGCATCAAAACTATGTGATCGCCGA 4386
Query 22801 GCTGGTTATTCCTCCTGAAACGGGCGGATTCTGGATCCGGGAAATTGGTGTATTTGATGA 22860
||| | ||||| || ||||| ||||| |||||||| || ||||| || | | ||| ||
Sbjct 4387 GCTCCTCATTCCGCCAGAAACCGGCGGTTTCTGGATGCGCGAAATGGGGCTCTATGACGA 4446
Query 22861 GCACGGCGATTTAATCGCGGTGGGAAATACTGCCGAAAGTTACAAGCCAGCCGTTGCCGA 22920
|||| | || || || || || | || ||||| |||||||| | | || ||
Sbjct 4447 CACCGGCACGCTGATTGCCGTCGGCAACATGGCGGAAAGCTACAAGCCGGAGCTGGCGGA 4506
Query 22921 AGGGTCCGGTCGTGCACAAACATTTCGCACCATTCTGACCGTATCCAGCACTGCCACCGT 22980
||||| || || || || || | || | | | | ||| | || | | ||
Sbjct 4507 GGGGTCAGGCCGCGCGCAGACCGTGCGTATGGTCATCATGGTAAGCGACATCGAGTCAGT 4566
Query 22981 GGCGCTTACCGTGGATAACACCATGGTGATGGCCACAGTGGATTACGTGGATGACAAACT 23040
| ||| || | || | | | | |||||||| || ||| || || || |||| ||
Sbjct 4567 CGAGCTGACGATTGACACCTCAACCGTGATGGCAACGCAGGACTATGTCGACAACAAGCT 4626
Query 23041 GAAAGAGCATGAACAGTCACGACGTCACCCGGACGCCTCGCTGACCGCAAAAGGCTTTGT 23100
|||||||| ||||| || ||||| || ||||| |||| |||| ||| || ||
Sbjct 4627 CGCTGAGCATGAGCAGTCCCGCCGTCATCCTGACGCTACGCTCACCGAAAAGGGTTTCAC 4686
Query 23101 TCAACTCAGTAGCGCCACTAACAGCGTGTCTGAAACGCAGGCTGCAACGCCGAAAGCAGT 23160
||||| || || || || ||||| ||||||| |||| || || ||||||||||| ||
Sbjct 4687 GCAACTAAGCAGTGCGACCGACAGCATGTCTGAGACGCTCGCAGCGACGCCGAAAGCGGT 4746
Query 23161 AAAGGCCGCGTATGATCTTGCTAACGGTAAATATACTGCGCAGGATGCCAGCACGACGCG 23220
||||| |||||||| ||||||||||| ||||| || || ||||| || | |||| |||
Sbjct 4747 CAAGGCGGCGTATGACCTTGCTAACGGGAAATACACGGCTCAGGACGCGACCACGGCGCA 4806
Query 23221 AAAAGGCCTTGTCCAGCTCAGTAGCGCCACCAACAGCACGTCTGAAACGCAGGCTGCAAC 23280
||| || | ||||||||||||||||| ||| ||||||||||||| |||| || || ||
Sbjct 4807 AAAGGGTATCGTCCAGCTCAGTAGCGCAACCGACAGCACGTCTGAGACGCTCGCAGCGAC 4866
Query 23281 GCCGAAAGCAGTAAAGGCCGCGTATGACCTTGCTAACGCAAAATATACCGCTCAGGACGC 23340
||||||||| |||||| | ||||||||||||||||||| |||||||| |||||||||||
Sbjct 4867 GCCGAAAGCGGTAAAGACGGCGTATGACCTTGCTAACGGTAAATATACGGCTCAGGACGC 4926
Query 23341 TACGACGGCACAAAAAGGGATAGTCCAGCTCAGTAGTGCCACCAACAGCACGTCTGAAAC 23400
|| ||||| ||||| || || |||||||||||||| || ||| ||||| ||||||| ||
Sbjct 4927 GACCACGGCGCAAAAGGGTATCGTCCAGCTCAGTAGCGCTACCGACAGCGCGTCTGAGAC 4986
Query 23401 ACTGGCCGCGACATCGAAAGCGGTTAAGGCGGTAATGGATGA 23442
||||| || ||| | || || || ||||| || | |||||
Sbjct 4987 GCTGGCGGCCACACCAAAGGCCGTGAAGGCCGTCAATGATGA 5028
Score = 199 bits (220), Expect = 9e-47
Identities = 174/215 (81%), Gaps = 1/215 (0%)
Strand=Plus/Plus
Query 23219 CGAAAAGGCCTTGTC-CAGCTCAGTAGCGCCACCAACAGCACGTCTGAAACGCAGGCTGC 23277
|||||||| || | || || || || || ||| |||||| |||||| |||| || ||
Sbjct 4672 CGAAAAGGGTTTCACGCAACTAAGCAGTGCGACCGACAGCATGTCTGAGACGCTCGCAGC 4731
Query 23278 AACGCCGAAAGCAGTAAAGGCCGCGTATGACCTTGCTAACGCAAAATATACCGCTCAGGA 23337
||||||||||| || ||||| ||||||||||||||||||| ||||| || ||||||||
Sbjct 4732 GACGCCGAAAGCGGTCAAGGCGGCGTATGACCTTGCTAACGGGAAATACACGGCTCAGGA 4791
Query 23338 CGCTACGACGGCACAAAAAGGGATAGTCCAGCTCAGTAGTGCCACCAACAGCACGTCTGA 23397
||| || ||||| ||||| || || |||||||||||||| || ||| |||||||||||||
Sbjct 4792 CGCGACCACGGCGCAAAAGGGTATCGTCCAGCTCAGTAGCGCAACCGACAGCACGTCTGA 4851
Query 23398 AACACTGGCCGCGACATCGAAAGCGGTTAAGGCGG 23432
|| || || ||||| |||||||||| ||| |||
Sbjct 4852 GACGCTCGCAGCGACGCCGAAAGCGGTAAAGACGG 4886
Score = 197 bits (218), Expect = 3e-46
Identities = 174/216 (81%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 23086 CGCAAAAGGCTTT-GTTCAACTCAGTAGCGCCACTAACAGCGTGTCTGAAACGCAGGCTG 23144
||||||||| | | || || ||||||||||| || ||||| |||||| |||| || |
Sbjct 4803 CGCAAAAGGGTATCGTCCAGCTCAGTAGCGCAACCGACAGCACGTCTGAGACGCTCGCAG 4862
Query 23145 CAACGCCGAAAGCAGTAAAGGCCGCGTATGATCTTGCTAACGGTAAATATACTGCGCAGG 23204
| ||||||||||| |||||| | |||||||| |||||||||||||||||||| || ||||
Sbjct 4863 CGACGCCGAAAGCGGTAAAGACGGCGTATGACCTTGCTAACGGTAAATATACGGCTCAGG 4922
Query 23205 ATGCCAGCACGACGCGAAAAGGCCTTGTCCAGCTCAGTAGCGCCACCAACAGCACGTCTG 23264
| || | |||| ||| ||| || | ||||||||||||||||| ||| ||||| ||||||
Sbjct 4923 ACGCGACCACGGCGCAAAAGGGTATCGTCCAGCTCAGTAGCGCTACCGACAGCGCGTCTG 4982
Query 23265 AAACGCAGGCTGCAACGCCGAAAGCAGTAAAGGCCG 23300
| |||| ||| || || || || || || |||||||
Sbjct 4983 AGACGCTGGCGGCCACACCAAAGGCCGTGAAGGCCG 5018
>seq1047
Length=26254
Score = 109 bits (120), Expect = 1e-19
Identities = 347/534 (65%), Gaps = 12/534 (2%)
Strand=Plus/Plus
Query 8856 ATGAAAATTTGTATCGACGACGGCTCCACCAACATCAAGCTGGCATGGACTGAGAACGGC 8915
|||||||||| || || |||||||| ||||| ||||| ||| |||| || |||
Sbjct 19795 ATGAAAATTTTCATTGATGACGGCTCTACCAATATCAAACTGCAGTGGAACGAAGCCGGA 19854
Query 8916 GAACGCCGCAACGCCATCAGCCCGAACAGCTTCAAGTCGGAATGGTCTGCGCCGTTCGGC 8975
| | | | | |||||||| |||||||| || || ||| ||| | |||||||
Sbjct 19855 CAGGTCAGGCAGTCAATCAGCCCTAACAGCTTTAAACGTGAGTGGGCTGTGGCGTTCGGT 19914
Query 8976 GGCACGCAGCCCGCG---AACTACATGCTTGATGGCGTGCGCTATGGTTTTGATCCGGTC 9032
| |||| ||| ||||| || | || | || ||| ||| || ||| ||
Sbjct 19915 T---CTCAGCAGGCGTTCAACTATCAACTGAACGGGGAGCAGTATTCTTTCGACCCGATC 19971
Query 9033 AG--CGATCGCT-TTGTCCAGACGACCGACACGCAATACCAGTACAGCGATGTAAATGTC 9089
|| || || |||| ||| | || || | || ||||||||||| || ||
Sbjct 19972 AGTCCGGAGGCAGTTGTGACGACTAACGTTGCG---TGGCAATACAGCGATGTGAACGTT 20028
Query 9090 ATTGCCATTCATCACGCGCTGGTCAAATCAGGCATCACGCCACAGGAGGTGGATGTGGTT 9149
||||| ||||||| ||||| |||| ||||| ||| || |||||| | |||
Sbjct 20029 GTTGCCGTTCATCATGCGCTTCTCAACAGCGGCATTGAGCCGTGCGAAGTGGATATCGTT 20088
Query 9150 GTCACCCTGCCACTGAGCGAGTATTTCGACACAAACGCACAGCCGGACATGGCCAACATC 9209
||||| ||||| ||| ||||||| ||||| ||| ||||| || || |||||
Sbjct 20089 GTCACACTGCCGCTGGCGGAGTATTACGACAAGAACAACCAGCCCAACGAAGCAAACATT 20148
Query 9210 AACCGCAAAAAAGCGAACGTTATGCGCCCGGTGGAGTACCAGAACGGCGAAGCATTCACT 9269
| || || ||| | ||| | |||| ||||| || | | ||| || | ||| |
Sbjct 20149 CAACGTAAGAAAACAAACCTGCTGCGGCCGGTCGAACTCAATGGCGGGAAAACCTTCTCC 20208
Query 9270 ATCCGTAACGTGCGGGTTATGCCTGAATCCATTCCGGCTGGCTTTAAAGCACTGGCTGAC 9329
| ||| | || || ||||| |||||||| |||||||| || ||| | ||
Sbjct 20209 GTTCGTCATGTTGACGTGATGCCAGAATCCATCCCGGCTGGTTTCGAAGTCGTTAAAAAC 20268
Query 9330 ATGAGTCCGTTTGAATCCCTGCTGATTGTGGATTTAGGTGGAACCACGCTGGAT 9383
| | | |||| || |||||||| || || | || ||||| ||||| |||
Sbjct 20269 CTCAACGAGCTTGATTCACTGCTGATCGTTGACCTGGGCGGAACGACGCTCGAT 20322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114480761078528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |