Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_026014.1 Length=35814 Score E Sequences producing significant alignments: (Bits) Value seq1001 542 6e-150 seq1047 109 1e-19 >seq1001 Length=29257 Score = 542 bits (600), Expect = 6e-150 Identities = 905/1302 (70%), Gaps = 12/1302 (1%) Strand=Plus/Plus Query 22145 CTGCCCGGTGCACCTGCTGCCTTATCTCGCCTGGGCGTTTTCCGTTGACCGCTGGGATCG 22204 |||||||| | |||||||| | || || |||||||||||||||||||||||||| Sbjct 3735 CTGCCCGGCAAATCTGCTGCCGTGGCTGGCGTGGGCGTTTTCCGTTGACCGCTGGGACGA 3794 Query 22205 CAACTGGCCGGAAGAGACAAAGCGACAGGTTATTCGTGATGCATGGCTGATACACCGACA 22264 ||||||||||| | |||||||| | || || || | || ||| | || || || Sbjct 3795 GAACTGGCCGGAGGCCACAAAGCGGGATGTGATCCGCGCGGCGTGGTTTATCCATGCGCA 3854 Query 22265 CAAAGGGACCATCAGCGCACTGCGCCGGGCCATTGAGCCGCTGGGATACCTCATTCGCGT 22324 |||||| || || | ||| ||||||| | | ||||| || || ||||| ||| ||| Sbjct 3855 CAAAGGAACGATTGGGGCAGTGCGCCGCGTGGTGGAGCCCCTCGGCTACCTGATTAACGT 3914 Query 22325 GTCTGAGTGGTGGGAGTTCGGCGGAGAACCGGGAACATTTACCGTTGAAGTCGGCACGCT 22384 ||| ||||||||||| | || ||| || || ||| | | || |||| | | Sbjct 3915 GTCGGAGTGGTGGGAAACCAACGACCCACCCGGCACGTTTCGCCTCGATATCGGTGTGTT 3974 Query 22385 GGACAGTGGCGTGACGGAGGAAATGTATCTGGAAATGGAGCGGTTGATTGCTGATGCCCG 22444 || | ||| | || |||||||||||| || ||||||||| | ||||| ||||| Sbjct 3975 AGAGACCGGCATCACCGAGGAAATGTATTACGAGATGGAGCGGCTCATTGCCGATGCAAA 4034 Query 22445 CCCGGTCAGCCGCCACATGACAGGGCTGAATATCATTCAGGAAATTCCGGGGGATATTTT 22504 || | ||| ||||| | | || || || || |||||||| | ||||| |||| | Sbjct 4035 GCCAGCCAGTCGCCATCTTATCGGCCTCAACATTATTCAGGATGTGCCGGG--ATATCTG 4092 Query 22505 CGCAGCGGCG-GCA-ACTTATGACGGTGAAGTTATTACCATTTATCCAGGCGATTAAGCA 22562 || ||||| || || |||||||| || || || |||| || | |||| Sbjct 4093 TACACCGGCGCGCTGACGTATGACGGCGACACCATCACGGTTTACCCGGA----TAAGTG 4148 Query 22563 TGAGTACCACAACACGAAAATTTAAAACCGTTATCACCGATACGGGTGCaaaaaaaTTAG 22622 || |||| ||| ||||| |||||| || |||||| | | ||||| | || | | Sbjct 4149 AGAACACCATGACAGTAAAATATAAAACGGTCATCACCAAAGCCGGTGCGATTAAGCTTG 4208 Query 22623 CTCAGGCAGCCGCGCCAGATGGTAAGCCTGTCCGCCTGACTCATATGGCAGTGGGCGACG 22682 || || ||| || | || || || | || ||||| | ||||||| Sbjct 4209 CTGCAGCGACCGTCCCGAACGGGAAAAAAGTGAATTTTACGGCGATGGCCATCGGCGACG 4268 Query 22683 GTGGCGGCACGTTGCCCACACCAGACAGTAAGCAGACCCGTCTGGTGCATGAGGTGTGGC 22742 |||||||||| ||||| || || | ||||| || | |||| || |||| Sbjct 4269 GTGGCGGCACATTGCCGGTGCCTGATGCCAGCCAGACAAAGCTCATCAATGAAGTCTGGC 4328 Query 22743 GACATACTGTTAATCGCGTCATCCTGGACGCAACA--CATCAGAACCGCATTATTGCGGA 22800 | ||||| | || ||| ||||||| |||| ||||| ||| | || || || Sbjct 4329 GCCATACGCTGAACAAAATCAGCCTGGAC--AACAAGCATCAAAACTATGTGATCGCCGA 4386 Query 22801 GCTGGTTATTCCTCCTGAAACGGGCGGATTCTGGATCCGGGAAATTGGTGTATTTGATGA 22860 ||| | ||||| || ||||| ||||| |||||||| || ||||| || | | ||| || Sbjct 4387 GCTCCTCATTCCGCCAGAAACCGGCGGTTTCTGGATGCGCGAAATGGGGCTCTATGACGA 4446 Query 22861 GCACGGCGATTTAATCGCGGTGGGAAATACTGCCGAAAGTTACAAGCCAGCCGTTGCCGA 22920 |||| | || || || || || | || ||||| |||||||| | | || || Sbjct 4447 CACCGGCACGCTGATTGCCGTCGGCAACATGGCGGAAAGCTACAAGCCGGAGCTGGCGGA 4506 Query 22921 AGGGTCCGGTCGTGCACAAACATTTCGCACCATTCTGACCGTATCCAGCACTGCCACCGT 22980 ||||| || || || || || | || | | | | ||| | || | | || Sbjct 4507 GGGGTCAGGCCGCGCGCAGACCGTGCGTATGGTCATCATGGTAAGCGACATCGAGTCAGT 4566 Query 22981 GGCGCTTACCGTGGATAACACCATGGTGATGGCCACAGTGGATTACGTGGATGACAAACT 23040 | ||| || | || | | | | |||||||| || ||| || || || |||| || Sbjct 4567 CGAGCTGACGATTGACACCTCAACCGTGATGGCAACGCAGGACTATGTCGACAACAAGCT 4626 Query 23041 GAAAGAGCATGAACAGTCACGACGTCACCCGGACGCCTCGCTGACCGCAAAAGGCTTTGT 23100 |||||||| ||||| || ||||| || ||||| |||| |||| ||| || || Sbjct 4627 CGCTGAGCATGAGCAGTCCCGCCGTCATCCTGACGCTACGCTCACCGAAAAGGGTTTCAC 4686 Query 23101 TCAACTCAGTAGCGCCACTAACAGCGTGTCTGAAACGCAGGCTGCAACGCCGAAAGCAGT 23160 ||||| || || || || ||||| ||||||| |||| || || ||||||||||| || Sbjct 4687 GCAACTAAGCAGTGCGACCGACAGCATGTCTGAGACGCTCGCAGCGACGCCGAAAGCGGT 4746 Query 23161 AAAGGCCGCGTATGATCTTGCTAACGGTAAATATACTGCGCAGGATGCCAGCACGACGCG 23220 ||||| |||||||| ||||||||||| ||||| || || ||||| || | |||| ||| Sbjct 4747 CAAGGCGGCGTATGACCTTGCTAACGGGAAATACACGGCTCAGGACGCGACCACGGCGCA 4806 Query 23221 AAAAGGCCTTGTCCAGCTCAGTAGCGCCACCAACAGCACGTCTGAAACGCAGGCTGCAAC 23280 ||| || | ||||||||||||||||| ||| ||||||||||||| |||| || || || Sbjct 4807 AAAGGGTATCGTCCAGCTCAGTAGCGCAACCGACAGCACGTCTGAGACGCTCGCAGCGAC 4866 Query 23281 GCCGAAAGCAGTAAAGGCCGCGTATGACCTTGCTAACGCAAAATATACCGCTCAGGACGC 23340 ||||||||| |||||| | ||||||||||||||||||| |||||||| ||||||||||| Sbjct 4867 GCCGAAAGCGGTAAAGACGGCGTATGACCTTGCTAACGGTAAATATACGGCTCAGGACGC 4926 Query 23341 TACGACGGCACAAAAAGGGATAGTCCAGCTCAGTAGTGCCACCAACAGCACGTCTGAAAC 23400 || ||||| ||||| || || |||||||||||||| || ||| ||||| ||||||| || Sbjct 4927 GACCACGGCGCAAAAGGGTATCGTCCAGCTCAGTAGCGCTACCGACAGCGCGTCTGAGAC 4986 Query 23401 ACTGGCCGCGACATCGAAAGCGGTTAAGGCGGTAATGGATGA 23442 ||||| || ||| | || || || ||||| || | ||||| Sbjct 4987 GCTGGCGGCCACACCAAAGGCCGTGAAGGCCGTCAATGATGA 5028 Score = 199 bits (220), Expect = 9e-47 Identities = 174/215 (81%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 23219 CGAAAAGGCCTTGTC-CAGCTCAGTAGCGCCACCAACAGCACGTCTGAAACGCAGGCTGC 23277 |||||||| || | || || || || || ||| |||||| |||||| |||| || || Sbjct 4672 CGAAAAGGGTTTCACGCAACTAAGCAGTGCGACCGACAGCATGTCTGAGACGCTCGCAGC 4731 Query 23278 AACGCCGAAAGCAGTAAAGGCCGCGTATGACCTTGCTAACGCAAAATATACCGCTCAGGA 23337 ||||||||||| || ||||| ||||||||||||||||||| ||||| || |||||||| Sbjct 4732 GACGCCGAAAGCGGTCAAGGCGGCGTATGACCTTGCTAACGGGAAATACACGGCTCAGGA 4791 Query 23338 CGCTACGACGGCACAAAAAGGGATAGTCCAGCTCAGTAGTGCCACCAACAGCACGTCTGA 23397 ||| || ||||| ||||| || || |||||||||||||| || ||| ||||||||||||| Sbjct 4792 CGCGACCACGGCGCAAAAGGGTATCGTCCAGCTCAGTAGCGCAACCGACAGCACGTCTGA 4851 Query 23398 AACACTGGCCGCGACATCGAAAGCGGTTAAGGCGG 23432 || || || ||||| |||||||||| ||| ||| Sbjct 4852 GACGCTCGCAGCGACGCCGAAAGCGGTAAAGACGG 4886 Score = 197 bits (218), Expect = 3e-46 Identities = 174/216 (81%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 23086 CGCAAAAGGCTTT-GTTCAACTCAGTAGCGCCACTAACAGCGTGTCTGAAACGCAGGCTG 23144 ||||||||| | | || || ||||||||||| || ||||| |||||| |||| || | Sbjct 4803 CGCAAAAGGGTATCGTCCAGCTCAGTAGCGCAACCGACAGCACGTCTGAGACGCTCGCAG 4862 Query 23145 CAACGCCGAAAGCAGTAAAGGCCGCGTATGATCTTGCTAACGGTAAATATACTGCGCAGG 23204 | ||||||||||| |||||| | |||||||| |||||||||||||||||||| || |||| Sbjct 4863 CGACGCCGAAAGCGGTAAAGACGGCGTATGACCTTGCTAACGGTAAATATACGGCTCAGG 4922 Query 23205 ATGCCAGCACGACGCGAAAAGGCCTTGTCCAGCTCAGTAGCGCCACCAACAGCACGTCTG 23264 | || | |||| ||| ||| || | ||||||||||||||||| ||| ||||| |||||| Sbjct 4923 ACGCGACCACGGCGCAAAAGGGTATCGTCCAGCTCAGTAGCGCTACCGACAGCGCGTCTG 4982 Query 23265 AAACGCAGGCTGCAACGCCGAAAGCAGTAAAGGCCG 23300 | |||| ||| || || || || || || ||||||| Sbjct 4983 AGACGCTGGCGGCCACACCAAAGGCCGTGAAGGCCG 5018 >seq1047 Length=26254 Score = 109 bits (120), Expect = 1e-19 Identities = 347/534 (65%), Gaps = 12/534 (2%) Strand=Plus/Plus Query 8856 ATGAAAATTTGTATCGACGACGGCTCCACCAACATCAAGCTGGCATGGACTGAGAACGGC 8915 |||||||||| || || |||||||| ||||| ||||| ||| |||| || ||| Sbjct 19795 ATGAAAATTTTCATTGATGACGGCTCTACCAATATCAAACTGCAGTGGAACGAAGCCGGA 19854 Query 8916 GAACGCCGCAACGCCATCAGCCCGAACAGCTTCAAGTCGGAATGGTCTGCGCCGTTCGGC 8975 | | | | | |||||||| |||||||| || || ||| ||| | ||||||| Sbjct 19855 CAGGTCAGGCAGTCAATCAGCCCTAACAGCTTTAAACGTGAGTGGGCTGTGGCGTTCGGT 19914 Query 8976 GGCACGCAGCCCGCG---AACTACATGCTTGATGGCGTGCGCTATGGTTTTGATCCGGTC 9032 | |||| ||| ||||| || | || | || ||| ||| || ||| || Sbjct 19915 T---CTCAGCAGGCGTTCAACTATCAACTGAACGGGGAGCAGTATTCTTTCGACCCGATC 19971 Query 9033 AG--CGATCGCT-TTGTCCAGACGACCGACACGCAATACCAGTACAGCGATGTAAATGTC 9089 || || || |||| ||| | || || | || ||||||||||| || || Sbjct 19972 AGTCCGGAGGCAGTTGTGACGACTAACGTTGCG---TGGCAATACAGCGATGTGAACGTT 20028 Query 9090 ATTGCCATTCATCACGCGCTGGTCAAATCAGGCATCACGCCACAGGAGGTGGATGTGGTT 9149 ||||| ||||||| ||||| |||| ||||| ||| || |||||| | ||| Sbjct 20029 GTTGCCGTTCATCATGCGCTTCTCAACAGCGGCATTGAGCCGTGCGAAGTGGATATCGTT 20088 Query 9150 GTCACCCTGCCACTGAGCGAGTATTTCGACACAAACGCACAGCCGGACATGGCCAACATC 9209 ||||| ||||| ||| ||||||| ||||| ||| ||||| || || ||||| Sbjct 20089 GTCACACTGCCGCTGGCGGAGTATTACGACAAGAACAACCAGCCCAACGAAGCAAACATT 20148 Query 9210 AACCGCAAAAAAGCGAACGTTATGCGCCCGGTGGAGTACCAGAACGGCGAAGCATTCACT 9269 | || || ||| | ||| | |||| ||||| || | | ||| || | ||| | Sbjct 20149 CAACGTAAGAAAACAAACCTGCTGCGGCCGGTCGAACTCAATGGCGGGAAAACCTTCTCC 20208 Query 9270 ATCCGTAACGTGCGGGTTATGCCTGAATCCATTCCGGCTGGCTTTAAAGCACTGGCTGAC 9329 | ||| | || || ||||| |||||||| |||||||| || ||| | || Sbjct 20209 GTTCGTCATGTTGACGTGATGCCAGAATCCATCCCGGCTGGTTTCGAAGTCGTTAAAAAC 20268 Query 9330 ATGAGTCCGTTTGAATCCCTGCTGATTGTGGATTTAGGTGGAACCACGCTGGAT 9383 | | | |||| || |||||||| || || | || ||||| ||||| ||| Sbjct 20269 CTCAACGAGCTTGATTCACTGCTGATCGTTGACCTGGGCGGAACGACGCTCGAT 20322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114480761078528