Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq486 179 3e-40 seq119 91.5 1e-13 >seq486 Length=217039 Score = 179 bits (198), Expect = 3e-40 Identities = 719/1103 (65%), Gaps = 42/1103 (4%) Strand=Plus/Plus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || |||||||| |||| ||| | ||||| ||||| | | ||| ||||| || ||||| Sbjct 174762 ACAGTGAATTGTATTGCATTTACAGCAGGCTTAGTACGTAAATAATACATTCCAGTCTTC 174821 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 || ||| | | ||| | ||| ||| || |||| ||| || |||| | || || || Sbjct 174822 AAGCCCATTTTCCACGCATAGAAATGAATCGATGTCAATTTTCCATAGTTTGGTTCTGCT 174881 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 || | || | ||||| ||||| || ||| ||| || || || |||||||| || Sbjct 174882 ACATGGATGTTAAATGATTGACTCTGGTCAATGAAAGCACCACGATCCGCGGCCAT-TTG 174940 Query 136819 AATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTT--AAAGAGCTCCT-TGACATTGGG 136874 || || | || | | || ||||| | || || ||||| ||| | | | ||||| Sbjct 174941 GATTGTGGTCTTCACAGATATCTCCCACACAGTCTTGTAAAGATCTCTTATTTCTTTGGG 175000 Query 136875 CGGAATTTCATCGATATTCTGTACAGATCCGTTGTTTT---TGATGATTTTCATCATGAG 136931 | ||||| ||| ||| | ||||| ||||| | | |||| || |||| Sbjct 175001 AATACTTTCA---ATAGACTGAATGGATCCATTGTTGTGTATAATGAGATTTTTCATATC 175057 Query 136932 ATCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACG-AGATGCTGATTTACTACTT 136990 |||| | | | | || ||| |||| | ||| | || || || || || || | Sbjct 175058 ATCATCCCATAAATCA--GC-CTCGGTGAGATCG-CGAAGCAGGTGATGGTTGACCACCT 175113 Query 136991 GATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATT 137050 | |||| || || || ||||| | | ||| | || |||||| ||||| || |||| Sbjct 175114 GGAATTCTCCAGAAAGAACTCTTCTTTGGTAAATGTTTGAAGTGAATGGCTCAAATGATT 175173 Query 137051 CGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAAT 137110 | ||||| || | |||||||||||| | || || |||||| || | ||||| || | Sbjct 175174 CATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCATGGGGGCCAGCAACAGAGAGT 175233 Query 137111 TCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCG 137170 |||| | || ||| || | | ||||| || | |||||| |||||| || | Sbjct 175234 TCCGCAGGCCATGTTTCGCGATCTTCTGCTTCAGAGCACTCCAGTCCCACAG---GTCTG 175290 Query 137171 ATTGGGTTATATTCCACAAAT--CAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGC 137228 ||||| |||| || || || | ||||| | ||| ||| || |||| | || Sbjct 175291 --TGGGTGTCTTTCCCCACATTTCATATTGCAATATTCCTTCACTGGCCGGACAACCAGC 175348 Query 137229 ATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATA 137288 ||| | ||||| ||| | || ||||||||| || ||| || ||||| Sbjct 175349 ATACGTTTCATAAACGCCGAGTTTTTCGGCCAGTTCACAGCTAGCTTCTAAAGCCCCATA 175408 Query 137289 GTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAG-CTTCTTGGCTGTCGTAGGGCA 137347 || || ||||| | |||| | ||| | | ||| | || ||| || ||||| || | Sbjct 175409 ATAGATGGTTTCAAATATTTGTTGATTGAGCT-TCTGGGCTCCTTCACTCTCGTAAGGAA 175467 Query 137348 T----ATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTG 137403 ||| |||| | |||||||| || || ||||| | || || |||||||||| | Sbjct 175468 GGCGCATC-AATACA---AAAGCATCGGCCAGACCTTGGACGCCAATGCCGATAGGTCGG 175523 Query 137404 TGTTTAAAATTTGATATTTGAGCG-CTAACAAGCGGATAAAAGTTTGCGTCTATAATTCT 137462 || | | || || ||| || || | | ||||| | || | || ||||| | Sbjct 175524 TGCCTCATGTTAGACTTTTTCGCTTCTGGGACG-GGATAGTAATTAACATCGATAATCTT 175582 Query 137463 ATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAGCTTTT 137522 || || || | ||| | || | ||| ||||| | || || ||||| | |||| Sbjct 175583 GTTCAGGTTCTCAGTTATGATTTTGGTCACTTGTTTTAGTTTCTCAAAATCATATGTTTT 175642 Query 137523 AGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTC 137582 | | | |||| |||| | ||||| ||||| || || |||||||| || || ||| Sbjct 175643 AT--TTTCGGTTA-CAAACATGTTGACAGCAATTGACGCCAAGTTGCAAACAGCTACTTC 175699 Query 137583 TGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAA 137642 | |||| | ||||| || | ||| ||||||||| | ||| |||||| Sbjct 175700 ATCAGCAGATGTGTACTCAACAATCTCCGTGCATAGATTGCTGCATTTGATGGTTCCCAA 175759 Query 137643 ATTCTTTTGATTG-TTTTTCTCGTTGACGTG-ATCTTTATATATCATATACGGAGTTCCG 137700 ||||||||||||| | ||||| |||| | || |||||| || | ||| || |||||||| Sbjct 175760 ATTCTTTTGATTGCTCTTTCT-GTTG-CATGCATCTTTGTAAAGCATGTATGGAGTTCCA 175817 Query 137701 GTTTCGACTTGAGTCTCAACAAT 137723 || || ||||| | ||||| ||| Sbjct 175818 GTCTCTACTTGTGCCTCAATAAT 175840 >seq119 Length=877449 Score = 91.5 bits (100), Expect = 1e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 105770 GCACGGCTTTCATGTACACGAATTCGGCGACACGAGCAACGGTTGCACGTCTGCCGGCGA 105829 ||||||||| || | ||||| ||||| |||| | |||||| ||||| || ||||||| Sbjct 424266 GCACGGCTTCCACATCCACGAGTTCGGGGACAACACCAACGGCTGCACCTCCGCCGGCGC 424325 Query 105830 GCATTTCAACCCTACGG-GCATGGCTCACGGCGCGCCCAGCTCTGCCGTTCGTCACGTCG 105888 ||| |||||||| | ||| | | ||||||||||||||| ||||| || || |||| Sbjct 424326 GCACTTCAACCCGCTGCAGCA-GACGCACGGCGCGCCCAGCGACGCCGTCCGCCATGTCG 424384 Query 105889 GTGATCTTGGCAAT 105902 | || | |||||| Sbjct 424385 GGGACTTGGGCAAT 424398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445084418758080