Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq170 98.7 1e-15 seq117 98.7 1e-15 >seq170 Length=689707 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/166 (74%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 || ||| || || | || || | ||| | ||||||||| | |||||||||||||||||| Sbjct 654330 CTCAAGTCCAGTAATATGTGCTATCATATGGGTGAGCAGAGCGTAGCTGGCTATGTTGAA 654271 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || |||||||||||||| | || ||||||||| | || ||||||| || Sbjct 654270 TGGCACACCCAGGCCCATGTCTGCACTCCGCTGGTACAGTAGACAGGAGAGCTTGCCACT 654211 Query 147102 GGCCACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||||||| ||||| ||| ||| || || || |||| ||||| Sbjct 654210 GGCCACGTGGAACTGCGCA-AGGCAATGACATGGTGGCAATGCCAT 654166 >seq117 Length=882221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/166 (74%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 || ||| || || | || || | ||| | ||||||||| | |||||||||||||||||| Sbjct 413030 CTCAAGTCCAGTAATATGTGCTATCATATGGGTGAGCAGAGCGTAGCTGGCTATGTTGAA 413089 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || |||||||||||||| | || ||||||||| | || ||||||| || Sbjct 413090 TGGCACACCCAGGCCCATGTCTGCACTCCGCTGGTACAGTAGACAGGAGAGCTTGCCACT 413149 Query 147102 GGCCACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||||||| ||||| ||| ||| || || || |||| ||||| Sbjct 413150 GGCCACGTGGAACTGTGCA-AGGCAATGACATGGTGGCAATGCCAT 413194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583474915281600