Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq666 143 4e-28 seq486 129 8e-24 seq216 122 1e-21 seq215 122 1e-21 seq203 109 8e-18 seq236 96.9 5e-14 seq65 95.1 2e-13 >seq666 Length=109244 Score = 143 bits (158), Expect = 4e-28 Identities = 189/261 (72%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 333080 TTGATGATCTTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACG 333139 ||||| | |||||||||||||| | |||||| |||| || |||||||| ||||||||| Sbjct 36246 TTGATCTTGTTGCGCACGACGTCGATGCCGCGGTCGTTGGAGGCGTTGAGCTCGAGCACG 36305 Query 333140 GCCTCGTCGGCGGCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTG 333199 || ||| | || || || | ||| |||||||||||||| ||| | ||||||||| Sbjct 36306 GCGTCGCGGAAGGAGGCCCCTAGCAGGGCGCGCGCCAGGCACAGGATCGTGGTGGTCTTG 36365 Query 333200 CCCGTGCCGGGCGGACCCGCCAGCAAGAGGTTGGGCATGTTGCC---GTCGGCGGCCAGC 333256 ||| ||| ||||| ||||| | | | ||||||| |||||| | |||| || Sbjct 36366 CCCACGCCCGGCGGGCCCGCGATGATCACGTTGGGCGCGTTGCCCGACTTGGCGAACACG 36425 Query 333257 GCCTTGAGGTAGGCAACGGCGTGCTCGTTGCCGACAATGTCGTCGAGCACCATTGGGCGG 333316 ||| || | || | || ||||||||| || |||||| || | | || ||| Sbjct 36426 GCC---AGCCGCGACACCGTGTCCTCGTTGCCCACGATGTCGCTGAACGTCTGCGGCCGG 36482 Query 333317 TACTTTTCGATCCATGGGAGG 333337 ||||| ||||||||||||||| Sbjct 36483 TACTTCTCGATCCATGGGAGG 36503 >seq486 Length=217039 Score = 129 bits (142), Expect = 8e-24 Identities = 176/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 259940 GCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCG 259999 |||| ||| || ||||| ||| || || || || || | | |||||||| ||| Sbjct 176395 GCCGCCACCCCCCGCCCTCAGCTCTCCTCATGTTTCCTCATCGCCATGAAGGACGACAGC 176336 Query 260000 ATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGC 260059 ||||| || ||||| ||||| || |||||||| || | || ||||| | || |||||| Sbjct 176335 ATCGAAGGTATCTACGACACTCTGAAGCAGTGTGCATTAATATCCAAATCCGCGGGCGGC 176276 Query 260060 ATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGC 260119 || || || | || | | || ||| ||||| | |||||||| |||||| Sbjct 176275 ATAGGAGTTCATGTTCATTGCATCAGAGCGAAAGGCACCTACATCGCGGGCACGAACGGC 176216 Query 260120 CAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGAC 260179 |||||||| || ||||||||||| ||||| | ||| |||||||||||||||| ||| Sbjct 176215 GTCTCCAACGGGCTGGTGCCCATGCTGCGCGTGTACAACAACACGGCGCGCTACGTGGAC 176156 Query 260180 CAGTGC 260185 ||| || Sbjct 176155 CAGGGC 176150 >seq216 Length=582351 Score = 122 bits (134), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | |||||||| |||||| |||| | ||| ||| ||| || Sbjct 33492 ATCTACAAGGTGTTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCCTCGAAGGCC 33545 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| || |||| | | || || | Sbjct 33546 ATGTCAATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGCGGAAGCGTCT 33605 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| |||||| | | | ||| | |||||| ||||| Sbjct 33606 CGTCTCGCCCACTACAACAAGCGTTCGACGATCACCTCCAGGGAGGTGCAGACCTCCGTG 33665 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| ||| || || |||| |||||||||| || || |||| Sbjct 33666 AGGCTCCTGCTGCCCGGTGAGCTCGCCAAGCACGCCGTCAGTGAAGGTACCA 33717 Score = 122 bits (134), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | |||||||| |||||| |||| | ||| ||| ||| || Sbjct 48037 ATCTACAAGGTGTTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCCTCGAAGGCC 48090 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| || |||| | | || || | Sbjct 48091 ATGTCAATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGCGGAAGCGTCT 48150 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| |||||| | | | ||| | |||||| ||||| Sbjct 48151 CGTCTCGCCCACTACAACAAGCGTTCGACGATCACCTCCAGGGAGGTGCAGACCTCCGTG 48210 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| ||| || || |||| |||||||||| || || |||| Sbjct 48211 AGGCTCCTGCTGCCCGGTGAGCTCGCCAAGCACGCCGTCAGTGAAGGTACCA 48262 >seq215 Length=584702 Score = 122 bits (134), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | |||||||| |||||| |||| | ||| ||| ||| || Sbjct 546663 ATCTACAAGGTGTTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCCTCGAAGGCC 546716 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| || |||| | | || || | Sbjct 546717 ATGTCAATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGCGGAAGCGTCT 546776 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| |||||| | | | ||| | |||||| ||||| Sbjct 546777 CGTCTCGCCCACTACAACAAGCGTTCGACGATCACCTCCAGGGAGGTGCAGACCTCCGTG 546836 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| ||| || || |||| |||||||||| || || |||| Sbjct 546837 AGGCTCCTGCTGCCCGGTGAGCTCGCCAAGCACGCCGTCAGTGAAGGTACCA 546888 Score = 122 bits (134), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | |||||||| |||||| |||| | ||| ||| ||| || Sbjct 556157 ATCTACAAGGTGTTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCCTCGAAGGCC 556210 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| || |||| | | || || | Sbjct 556211 ATGTCAATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGCGGAAGCGTCT 556270 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| |||||| | | | ||| | |||||| ||||| Sbjct 556271 CGTCTCGCCCACTACAACAAGCGTTCGACGATCACCTCCAGGGAGGTGCAGACCTCCGTG 556330 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| ||| || || |||| |||||||||| || || |||| Sbjct 556331 AGGCTCCTGCTGCCCGGTGAGCTCGCCAAGCACGCCGTCAGTGAAGGTACCA 556382 >seq203 Length=607560 Score = 109 bits (120), Expect = 8e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 333080 TTGATGATCTTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACG 333139 ||||| | |||||||||||||| | |||||| |||| || |||||||| ||||||||| Sbjct 83124 TTGATCTTGTTGCGCACGACGTCGATGCCGCGGTCGTTGGAGGCGTTGAGCTCGAGCACG 83065 Query 333140 GCCTCGTCGGCGGCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTG 333199 || ||| | || || || | || |||||||||||||| ||| | ||||||||| Sbjct 83064 GCGTCGCGGAAGGAGGCCCCTAGCAGCGCGCGCGCCAGGCACAGGATCGTGGTGGTCTTG 83005 Query 333200 CCCGTGCCGGGCGGACCCGC 333219 ||| ||| ||||| ||||| Sbjct 83004 CCCACGCCCGGCGGGCCCGC 82985 >seq236 Length=545527 Score = 96.9 bits (106), Expect = 5e-14 Identities = 121/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 165747 TTGGCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCAC 165806 ||||| || ||| ||| ||| ||| | || ||||| ||||| || || ||| Sbjct 5382 TTGGC-GATCTGTTCAGCTGGTCCGCGATTGGCGCGCGTACCACGGAATCGCAAACCCAC 5440 Query 165807 CGCGAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGC 165866 |||||||||||||| | ||| || |||| |||| || |||||| | ||||| |||||| Sbjct 5441 CGCGAGATGGCGTCTGGCCTGTCGATGCCGGTTGGTTTTAAAAACGGTACCGATGGCAGC 5500 Query 165867 GTGGCGACGGCCCTCGATGCCGTGCGCACTGCCGCCCAGCCACAC 165911 |||||||||| || | ||| ||||| | || |||| ||| ||| Sbjct 5501 CTGGCGACGGCGATCAACGCCATGCGCGCGGCTGCCCTGCCGCAC 5545 >seq65 Length=1244346 Score = 95.1 bits (104), Expect = 2e-13 Identities = 131/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 ||| ||||| |||||||||||| |||||||| || | | | || | ||| || | || Sbjct 631508 GAAGAAGGCTGACTGGGCGATGCAGTGGATCGGCA-GCAAGACCGCAACA-TTCGGTGAA 631565 Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATC 1456240 | | || | || || || || ||||||||||| ||||| ||||||||| ||||| Sbjct 631566 AGAATAGTAGCATTCGCGGCAGTTGAGGGCATCTTCTTCTCTGGCAGTTTCGCATCCATC 631625 Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATC 1456298 || ||||| || ||| | || ||||||||||| | | ||| ||||| ||||| ||| Sbjct 631626 TTCTGGCTTAAAAAGAGAGGGCTCATGCCCGGAC-TGACCTTCAGCAATGAATTGATC 631682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177638165402628