Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq197 132 4e-26 seq1030 123 2e-23 seq119 87.8 2e-12 >seq197 Length=620651 Score = 132 bits (146), Expect = 4e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 || ||| |||||||| | | || ||||| || | || ||||||||| |||||||| Sbjct 446243 TTAATTGCCACCACGGAGACGTAATACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTA 446302 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 |||| |||||| || | || |||||||| ||||| || || || | ||||||||||| Sbjct 446303 GTCGGACAAGGTGCGACCATCCTCCAGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTC 446362 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682 | |||| | |||||||||| |||||| ||| | | | | | ||||| | Sbjct 446363 TGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGC 446422 Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||| || |||| ||||| || || ||||||| ||| ||||| || |||||||||| Sbjct 446423 TTCAACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCATTC 446478 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| || | ||| | ||| |||||| ||||||||||| |||| |||||| || | || Sbjct 447664 CAAAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATC 447723 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||||||| ||||| || || || | ||||| ||||| | ||| | || ||||||||| Sbjct 447724 CTCCAGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTC 447783 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 |||||| ||||| | | | | ||||| | ||| || |||| ||||| || Sbjct 447784 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGGGTGATGGT 447843 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||| |||||| || || |||||||| Sbjct 447844 CTTTCCTGTCAGAGTTTTGACGAAAATCTGCAT 447876 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | ||||| || |||| || ||||||||||| || || Sbjct 448141 CTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAA 448200 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| ||||| || |||||||| |||||| ||| | | | Sbjct 448201 GATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATT 448260 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | ||| || |||| ||||| || || || |||| |||||||| Sbjct 448261 CTCGATGGTGTCTGAAGCTTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 448320 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 448321 GAAAATCTGCAT 448332 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | ||||| || |||| || ||||||||||| || || Sbjct 446513 CTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAA 446572 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| ||||| || |||||||| |||||| ||| | | | Sbjct 446573 GATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATT 446632 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | ||| || || | ||||| || || || |||| |||||||| Sbjct 446633 CTCGATGGTGTCTGAAGCTTCGACTTCTAGGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 446692 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 446693 GAAAATCTGCAT 446704 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| | ||| || | || || || |||||||| || || Sbjct 447913 CTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCTTCTAGTTGCTTACCAGCGAA 447972 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | | |||||||||| |||||| ||| | | | Sbjct 447973 GATCAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTTACATT 448032 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | ||| || |||| ||||| || || ||||||| ||| ||||| Sbjct 448033 CTCGATGGTGTCCGAAGCTTCAACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTCAC 448092 Query 35725 AAATATCTGCATTC 35738 || |||||||||| Sbjct 448093 GAAAATCTGCATTC 448106 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 35513 CCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAG 35572 ||||| | | ||| || | ||| | ||| |||||| ||||||||||| |||| |||| Sbjct 448366 CCACGCAGACGCAAAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAAG 448425 Query 35573 GTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACG 35632 || || | || || ||||| || || || || ||||||| ||||||||| | |||| Sbjct 448426 GTGCGACCATCCTCTAGCTGGTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATT 448485 Query 35633 CTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCC 35692 | ||| ||||| |||||| || | | | | | |||| | ||| || ||| Sbjct 448486 CCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGATGTCTGAAGCTTCAACTTCC 448545 Query 35693 ACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||| || || ||||||| ||| || ||||| |||||||| Sbjct 448546 AGAGTGATGGTCTTTCCCGTCAGAGTCTTGACAAAGATCTGCAT 448589 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || |||||| || | || ||| || || |||||||| |||| | Sbjct 449566 CCACCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 449625 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| || |||||||| || || || || | ||||||||||| | || Sbjct 449626 AAGGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCGGG 449685 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||| |||||| |||||| ||| | | | | ||||| | || ||| Sbjct 449686 ATGCCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCTGCAGGCTCGACC 449745 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| ||||| || |||| || ||||| ||||||||||| Sbjct 449746 TCCAAAGTGATGGTTTTCCCAGTCAGGGTCTTCACGAATATCTGCAT 449792 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| || | || ||| || | || |||| ||||||||| || || Sbjct 446969 CTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAACTGCTTACCAGCGAA 447028 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||| | || |||||||||| |||||| || | | | Sbjct 447029 GATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATT 447088 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| | || ||||| | ||||| |||||||| || | ||| || || Sbjct 447089 CTCGATAGTATCGGCTGGCTCGACCTCAAGAGTGATAGTTTTACCAGTAAGAGTCTTGAC 447148 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 447149 GAAAATCTGCAT 447160 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || ||| || || || || || || | | Sbjct 448863 CCACCACGCAGACGCAATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCAGAC 448922 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| || || || ||||| || || || | ||||||||||| | ||| Sbjct 448923 AATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGG 448982 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||| |||||| ||||| | | | | ||||| | |||||| Sbjct 448983 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCCACT 449042 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | |||||||| || |||||||| Sbjct 449043 TCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 449089 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || ||| || || || || || || | | Sbjct 446706 CCACCACGCAGACGCAATACCAAGTGAAGAGTCGACTCTTTCTGGATATTATAGTCTGAC 446765 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| || || || ||||| || || || | ||||||||||| | ||| Sbjct 446766 AATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGG 446825 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||| |||||| ||||| | | | | ||||| | ||| || Sbjct 446826 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACT 446885 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | |||||||| || |||||||| Sbjct 446886 TCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 446932 >seq1030 Length=27445 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 35521 CCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTC 35580 |||||||||||| || | ||| ||||| || |||||||| |||| || ||| || | Sbjct 2685 CCTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCC 2744 Query 35581 GTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTT 35640 || |||||||| ||||| || || |||| ||||||||||||| || | | |||||| Sbjct 2745 ATCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGGATACCCTCCTT 2804 Query 35641 GTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGAT 35700 |||| |||||| || | | || | | |||||| | |||||||| | ||||| Sbjct 2805 GTCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCCACCTCAAGGGTGAT 2864 Query 35701 CGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||| | || ||||| || |||||||| Sbjct 2865 GGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCAT 2900 >seq119 Length=877449 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/138 (75%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 42694 CACGTTGCCCAAGTCGCCGAGATGGCG--TTGCG-CGCTAAACTGACCGCCGTGCGGTTG 42750 ||| ||||||||||| |||| |||||| ||| |||| | ||||||||| || Sbjct 424401 CACATTGCCCAAGTCCCCGACATGGCGGACGGCGTCGCT---GGGCGCGCCGTGCGTCTG 424345 Query 42751 ATGGTGCGGGTTCAAGTGCTCGCCGGCCGACGTGCAACCGTTCGACGTGTCCCCAAACTC 42810 || ||||||| |||||| ||||||| || ||||| ||||| | ||||||| ||||| Sbjct 424344 CTGCAGCGGGTTGAAGTGCGCGCCGGCGGAGGTGCAGCCGTTGGTGTTGTCCCCGAACTC 424285 Query 42811 GTGTATGTGCAGACCGTG 42828 ||| ||||| | ||||| Sbjct 424284 GTGGATGTGGAAGCCGTG 424267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450783490953520