Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq486 383 2e-101 seq65 113 6e-20 >seq486 Length=217039 Score = 383 bits (424), Expect = 2e-101 Identities = 1040/1580 (66%), Gaps = 34/1580 (2%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || || || ||||||| ||| ||||| || || |||| || | |||| | |||||| Sbjct 174786 GCAGGCTTAGTACGTAAATAATACATTCCAGTCTTCAAGCCCATTTTCCACGCATAGAAA 174845 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || ||| | ||| ||| |||| || |||| ||| || || | |||||||| Sbjct 174846 TGAATCGATGTCAATTTTCCATAGTTTGGTTCTGCTACATGGATGTTAAATGATTGACTC 174905 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 || || |||||||| || | ||| || ||||||| || | |||| || || ||| Sbjct 174906 TGGTCAATGAAAGCACCACGATCCGCGGCCATTTGGATTGTGGTCTTCACAGATATCTCC 174965 Query 68575 CAAATAGTCTT--AAAAATCTGTTTGATATCATCTGGAAGGCTCGTATTT---TGAATGG 68629 || | |||||| ||| |||| || || || | |||| || | | ||||||| Sbjct 174966 CACACAGTCTTGTAAAGATCTCTT--ATTTCTTTGGGAATACTTTCAATAGACTGAATGG 175023 Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689 ||||| | | |||||| | ||| || || ||||||| ||| || | ||| || | Sbjct 175024 ATCCATTGTTGTGTATAATGAGATTTTTCATATCATCATCCCATAAATCAGCCTCGGTGA 175083 Query 68690 AAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGT 68749 | | | ||| || || | || || | || ||||| ||||| | ||||| | || Sbjct 175084 GATCGCGAAGCAGGTGATGGTTGACCACCTGGAATTCTCCAGAAAGAACTCTTCTTTGGT 175143 Query 68750 AAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATG 68809 |||| || || |||| || | |||||||| || || ||||| || ||||| || | Sbjct 175144 AAATGTTTGAAGTGAATGGCTCAAATGATTCATTGTTGCCAAGAATCTGTGCAGTGGAGG 175203 Query 68810 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTT 68869 | || ||||| || |||| ||| | | || | || |||||| | ||| || | | Sbjct 175204 CGGTGGGCATGGGGGCCAGCAACAGAGAGTTCCGCAGGCCATGTTTCGCGATCTTCTGCT 175263 Query 68870 TTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATT--CCAAAGATCGTATTGTAG 68927 | ||| |||| ||||| || || | ||| | || ||| | || ||||| | Sbjct 175264 TCAGAGCACTCCAGTCCCACAGGTCTGTGGGT--GTCTTTCCCCACATTTCATATTGCAA 175321 Query 68928 AATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAG 68987 ||||| | ||| || | ||| ||| ||||||||| || | ||| || || Sbjct 175322 TATTCCTTCACTGGCCGGACAACCAGCATACGTTTCATAAACGCCGAGTTTTTCGGCCAG 175381 Query 68988 TTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATC 69047 |||||| || || ||||| || || ||||| || ||||| || || | | |||||| | Sbjct 175382 TTCACAGCTAGCTTCTAAAGCCCCATAATAGATGGTTTCAAATATTTGTTGATTGAGCTT 175441 Query 69048 TTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTG 69107 || ||| || ||| ||| | ||| | | | | ||| ||||| |||| || || Sbjct 175442 CTGGGCTCCTTCACTCTCGTAAGGAAGGCGCATCAATACAAAAGCATCGGCCAGACCTTG 175501 Query 69108 AACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATA 69167 || ||||| |||||||||| || ||| | || || ||| |||||||| | ||||| Sbjct 175502 GACGCCAATGCCGATAGGTCGGTGCCTCATGTTAGACTTTTTCGCTTCTGGGACGGGATA 175561 Query 69168 ATAATTAATATCTATAATTTTATTAAGATT-TCGGACTACTACTTTAACCACGTCCTTTA 69226 ||||||| ||| ||||| || || || || || | || | ||| ||| | |||| Sbjct 175562 GTAATTAACATCGATAATCTTGTTCAGGTTCTCAG-TTATGATTTTGGTCACTTGTTTTA 175620 Query 69227 GTTTGAGAAAATCAAATCGTCCA---TCTATAACAAACATATTCAGTGCTACAGATGCTA 69283 |||| ||||||| || | | || | |||||||| || | || | || || | Sbjct 175621 GTTTCTCAAAATCATATGTTTTATTTTCGGTTACAAACATGTTGACAGCAATTGACGCCA 175680 Query 69284 GATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTAC 69343 || ||||| ||||| |||| || | || || | | ||||| || |||||||| | Sbjct 175681 AGTTGCAAACAGCTACTTCATCAGCAGATGTGTACTCAACAATCTCCGTGCATAGATTGC 175740 Query 69344 TACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAA 69403 | |||||||| || |||| ||| | ||||| |||||| |||| || || || ||||||| Sbjct 175741 TGCATTTGATGGTTCCCAAATTCTTTTGATTGCTCTTTCTGTTGCATGCATCTTTGTAAA 175800 Query 69404 GAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAG 69463 | || | ||||| ||||| || | || | || ||||||| ||||| ||| Sbjct 175801 GCATGTATGGAGTTCCAGTCTCTACTTGTGCCTCAATAATAGCCTTCCA--------TAG 175852 Query 69464 CATTT-ATTACGGTCTTGT-----AACGCTTC--TCTTTTTCATATTGTGTATATAGCCG 69515 |||| | ||| ||| | || || | |||| |||||||| ||||| Sbjct 175853 GATTTGAGCGCGGACTTTTTTAACAAACCTACCTTCTTGTTCATATTTCTGATATAATGC 175912 Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 || ||||||||||||||| |||| |||| ||||| | || | || ||||| | Sbjct 175913 ATCAAATTCATCTCCCCAACAATCAGCCAAGCCAGGGCTGTCGTGAGGGCACATAAGGCT 175972 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-A 69634 |||| | || | | || ||| | ||||| |||||||| | ||||| ||||| ||| | Sbjct 175973 CCACTCCTCGTTGTTCTCAACCCTCTTCATGAATAGATCTGAGATCCACAGAGC-ATAGA 176031 Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 | || |||| | | ||| || || || || || || || | || || ||||| | Sbjct 176032 ACAGCTCTCGCGCGCGCACTTCCTCTTTGCCCGTGTTCTTCTTCAAGTCTAGGAACTCGA 176091 Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTC 69754 || |||| ||||| || || || || | || | | | || || || || || || | Sbjct 176092 ATATGTCAGCGTGCCACGGCTCGAGGTAGACGGCGAAGGCGCCGGGCCGCTTGTTGCCGC 176151 Query 69755 CCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAG 69814 |||| || | ||| | || ||||| || || || | |||||| || | | || || | Sbjct 176152 CCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGCCCGTTGG 176211 Query 69815 ATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGAC 69874 | || || || || | || || | ||| | || | || | || | | | Sbjct 176212 AGACGCCGTTCGTGCCCGCGATGTAGGTGCCTTTCGCTCTGATGCAATGAACATGAACTC 176271 Query 69875 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCT 69934 |||| || || || ||| || |||| ||||| | |||| ||||| || ||||| | Sbjct 176272 CTATGCCGCCCGCGGATTTGGATATTAATGCACACTGCTTCAGAGTGTCGTAGATACCTT 176331 Query 69935 CTATGCTATCATCTATCATG 69954 | ||||| || || ||||| Sbjct 176332 CGATGCTGTCGTCCTTCATG 176351 >seq65 Length=1244346 Score = 113 bits (124), Expect = 6e-20 Identities = 160/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || ||||| || || || ||||| ||||| || || | ||||| Sbjct 631695 CCTCATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCTTTT 631636 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || |||| || ||| ||||| ||||||||||| || ||||| || |||| Sbjct 631635 TAAGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGAATG 631576 Query 39759 CAACAAGTCTCTCTCCGTAACTTG-TATCATTATG--TATCCACTTCTGTGCCCAATCAG 39815 | || | ||| || ||| | ||| || | || ||||||| | ||||| |||| Sbjct 631575 CTACTATTCTTTCACCGAATGTTGCGGTCTTGCTGCCGATCCACTGCATCGCCCAGTCAG 631516 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | |||||||||||||| || | || || | |||||| || || Sbjct 631515 CCTTCTTCTTTACACAGGGAAGGGTCTCAACAGCATTGAACAG 631473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686893396070160