Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_027339.1
Length=38389
Score E
Sequences producing significant alignments: (Bits) Value
seq986 944 0.0
seq997 279 1e-70
seq960 165 2e-36
seq1102 105 2e-18
>seq986
Length=30461
Score = 944 bits (1046), Expect = 0.0
Identities = 989/1297 (76%), Gaps = 2/1297 (0%)
Strand=Plus/Plus
Query 19794 TTTCTAAGTAAATTCTACCTATATATTCACCGAGAACACCAATCCCGATCAGTTGCACTC 19853
|||| | ||||| || || || || || ||||| |||||||| ||||| |||||||| |
Sbjct 11778 TTTCGATATAAATCCTTCCAATGTACTCTCCGAGCACACCAATGCCGATAAGTTGCACAC 11837
Query 19854 CACCCAAGAAAAGTATTGATACAAGCAGGGAGGGATACCCGCGTACTGGGTTACCAAAGA 19913
|||| | |||||| || || ||||| | || ||||| || || || | || |||||
Sbjct 11838 CACCAAGGAAAAGGATGGAGACAAGTAATGACGGATAGCCACGCACAGCATTGCCAAAAG 11897
Query 19914 CAAGGGTGTCTATAATCATCCATGCACCATATAAAAATGAAATGCTTGCAACAAACAAG- 19972
| || ||||||| |||||||||||| ||||| | ||||| | | |||||| ||||||
Sbjct 11898 CCAGAGTGTCTACAATCATCCATGCGCCATAGAGAAATGCGAGACCTGCAAC-AACAAGC 11956
Query 19973 CCTATATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGATACCTTCCAGTGCC 20032
|| ||||| ||||| | ||| ||||| ||||| || ||||| |||||||| || || ||
Sbjct 11957 CCGATATAGGTCCACATGCGCAGAGGGAAGGTAGAGAAACTGGTGATACCCTCAAGAGCA 12016
Query 20033 AGATTCCATAATTTCCAGCCATTAAATTTTGAGATGCCAGCAACACGCTCTGCGCGTACA 20092
|| |||||||| ||||| ||||||||||||| |||| ||||| || || ||||| ||
Sbjct 12017 AGGTTCCATAACTTCCAACCATTAAATTTTGTACTGCCTGCAACGCGTTCAGCGCGGGCA 12076
Query 20093 TATTCAACGACATCCGTCTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAAGATTG 20152
|||||||| |||||||| ||||||| ||||||||||| | || |||||||| || ||
Sbjct 12077 TATTCAACAACATCCGTGCGACCACCAACCCAGCTCAGAACTCCCTTCATGAAGAGGTTT 12136
Query 20153 CGCTCAGGCAACAGTTTAATGTTCTCCACAACCTCACGAGACATGAGTCGAAAATCTCCG 20212
| ||| |||| || || ||||| || || |||||||| ||||| || || ||||| |||
Sbjct 12137 CTCTCTGGCATGAGCTTGATGTTTTCGACCACCTCACGGGACATCAGACGGAAATCACCG 12196
Query 20213 ACATTTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAATTTATAGAACCACTCAGCT 20272
|||||||||||||||| ||| | || ||||||||||| || |||||||||||||| ||
Sbjct 12197 ACATTTTCCTCGATCTGCGGGTTACTGATTTTGTTGTGCAACTTATAGAACCACTCGGCA 12256
Query 20273 GTCTTACGTTTCAGTCGTCCATCAGTTGAGCGGTCTGAACGTTTAGCAAGCACCATGTCA 20332
| ||||||||||| || | |||||| |||||||| || || || || || ||||||||
Sbjct 12257 GATTTACGTTTCAGACGACTATCAGTGGAGCGGTCAGAGCGCTTGGCCAGTACCATGTCG 12316
Query 20333 GCACCTGCCTGCCACTTTTCAATAAGATGAGGGATAACCTCAATTGGGTCTTGCAGGTCG 20392
|| || |||||||| || || || ||||| || || |||||||||||||| |||| |||
Sbjct 12317 GCCCCGGCCTGCCATTTCTCTATCAGATGCGGAATGACCTCAATTGGGTCCTGCAAGTCT 12376
Query 20393 ACATCAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAACCCTGCAAATAAGGCTGGT 20452
|| ||||| || || | || || || | || ||||||| || || ||||| || ||
Sbjct 12377 ACGTCAATCGGGATAATTGCTTCACCTGTAGCGTGGTCTAGGCCGGCGAATAAAGCAGGC 12436
Query 20453 TCTTTACCAAAGTTGCGTGTAAATGACAGCGGAACAACTAGCGGGTCTGAAACAGCCAGC 20512
||||| ||||||||||| || || || || ||||| || ||||| |||| || ||| |||
Sbjct 12437 TCTTTTCCAAAGTTGCGGGTGAAGGAAAGAGGAACCACAAGCGGATCTGCAATAGCAAGC 12496
Query 20513 GCGTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCATTTATGAATACAATTTCTACT 20572
||||| |||||||| || || |||||||| || |||||||| ||||| || || || |||
Sbjct 12497 GCGTTTATAATTGATTCGGTCGCATCTTTGCTACCGTCATTGATGAAGACTATCTCAACT 12556
Query 20573 TCATATGGCTTCAACTCTTGGAATTCACGTACCGTTTTATAGAAAACAGGTATCGCTTCT 20632
|| | |||| ||| ||| || || || || | ||| ||||| | || || |||||
Sbjct 12557 TCCTGCTGCTTTAACCCTTCAAACTCCCGCACGGCTTTGTAGAAGATTGGAATTGCTTCC 12616
Query 20633 TCTTCATTGAAGACAGGAACGACAAGAGATATTTTCATTTCGCATCCCTAAAGACAATGA 20692
|||||||| || || |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 12617 TCTTCATTAAACACCGGAACGACCAGAGAAATTTTCATTTCGCATCCCTAAAGACAATGA 12676
Query 20693 ACTTTGAATAGACGAAACCGCACACCAGACTGATGGCGGAGAAGGTGATAAGAGTGACTA 20752
|||||||||||| ||| |||||||||||||||||||||||||| ||| | || | |
Sbjct 12677 ACTTTGAATAGATGAAGCCGCACACCAGACTGATGGCGGAGAAAACGATTAACGTAATAA 12736
Query 20753 TTGGAGGAAGTGAGCATTTATCAGCTGCCCAACCAACAATCACACTCAATATTCCCATAA 20812
| || | ||| |||| ||||| ||||||||| | |||| | |||||||
Sbjct 12737 TCGGGGCAAGCCCTGATTTGTCAGCACACCAACCAACGGCGGCGCTCAGCGTACCCATAA 12796
Query 20813 ATCCCACGTATAACATGTAGCGCATCGCTGTAGTCGATGCTTTGAATGTGAATCTTGCAT 20872
| || || || | |||||||||||| | || || || | || || ||||| || || |
Sbjct 12797 ACCCTACATACAGCATGTAGCGCATGGTCGTTGTAGAAGACTTAAAGGTGAACCTGGCGT 12856
Query 20873 TCGCGAAGAAGCTAAAGCTCACAGCCACTACGAAACCTGTGAAGTTTGCCAGAGCCTGAC 20932
| ||||| |||||||| ||| || ||||| || || | |||||| |||||||| || |
Sbjct 12857 TTGCGAAAAAGCTAAATGACACCGCAACTACAAATCCGGCGAAGTTAGCCAGAGCTTGCC 12916
Query 20933 TGGTATGTGCGGCATAGATACATACACCAAAAACCACCCAGTGTATAAGTGTGTTCAGCA 20992
|| || | | || ||| | | | || || |||||||| || || ||||| | |
Sbjct 12917 CTGTGTGGAAGACGTAAATAGAAATGGCGAACACAACCCAGTGAATGAGCGTGTTGATAA 12976
Query 20993 CACCTATAGATGTGTACTTTACAAATAACTTTAACATTTATTTAATCAATGAGCTCTGAA 21052
||||||| ||||||||| | | ||||||||||||||| ||||| ||| || |||
Sbjct 12977 CACCTATTGATGTGTACCTGGCGAATAACTTTAACATTATAGAAATCAGTGAATTCGGAA 13036
Query 21053 AGGCATGAAGTCTATCATCCAAGTCTCAATTGATCGA 21089
||| |||||| || |||| | || ||||||||
Sbjct 13037 AGGTCTGAAGTGTAGCATCACACATGCACTTGATCGA 13073
>seq997
Length=29618
Score = 279 bits (308), Expect = 1e-70
Identities = 369/514 (72%), Gaps = 26/514 (5%)
Strand=Plus/Minus
Query 36611 AAAGGCGCATGTGATCAGCTACGGCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGG 36670
||||||||||| |||| ||| ||||||||||| | ||||| || || || |||||||||
Sbjct 18364 AAAGGCGCATGCGATCTGCTGCGGCGCTGGACTCATGCTGGAGGCAAACAGTGGAAAGGG 18305
Query 36671 CTGA-TGACTCGCCGTGAGATTGAGCGTGAAGTCTGTTTGTGGGGGCAACAATGAGTAGA 36729
||| | || ||||| |||| |||||| ||| |||| |||||| || |||||| ||
Sbjct 18304 -TGAGTAACGCGCCGGGAGAATGAGCGCGAATTCTGCATGTGGGACCATAAATGAGCTGA 18246
Query 36730 GTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTT 36789
|||||||||| |||| |||| | ||||||||| | | |||| || | ||||| ||
Sbjct 18245 TTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATT 18186
Query 36790 AATCATTACCGTGATAACGCCATGACCTACAAAGAACAGCGCGACAAAGCCAC------- 36842
|| || || || || |||||||| ||||||||||| |||||||| ||||||||
Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAA 18126
Query 36843 --------------ATCCATCATCGCTGACATGCAGAAGCGTCAACATGATGTAGCTGAA 36888
||| |||| |||||||||| || || | ||||| ||||
Sbjct 18125 CTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCG 18066
Query 36889 CTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAAAGTCTTCGT 36948
|| || |||| |||||| || | |||||||| || | | || || |||| | |
Sbjct 18065 CTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCAT 18006
Query 36949 GCTGATGTTTCTGCTGGTCGTAAGTGGCTGCACGTCAAAGCAGTCTGTCCGGACAAGCAT 37008
||||| |||||| |||||| ||||||| |||| ||| |||||| | | |
Sbjct 18005 AGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCC---CGCGAAC 17949
Query 37009 AAAACCACCGCCGCCTCCGGCGTGGATGATGCTTCCAGCCCCAGACTTACTGACACCGCT 37068
| | |||| | || |||| ||| ||||||||| ||||||||||||||||| |||||
Sbjct 17948 GGAGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGACTCCGCT 17889
Query 37069 CAACGGGATTATTTCGTTCTCAGAGAGCGCATCG 37102
|||||||||||||| | |||||| |||| ||||
Sbjct 17888 GAACGGGATTATTTCATCCTCAGAAAGCGAATCG 17855
>seq960
Length=33163
Score = 165 bits (182), Expect = 2e-36
Identities = 292/424 (69%), Gaps = 4/424 (1%)
Strand=Plus/Plus
Query 8776 CGGTTCACGATGACCGAACAACAGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTC 8835
|| ||||| ||||||| | ||| | ||||| | ||| | || || || || |
Sbjct 18284 CGTTTCACCCTGACCGAGCGCCAGTCGCTGCTCAACTACGGCATCGCCACCGCCTACTAC 18343
Query 8836 GAAAGCGGGGTGCTGCGCATTCAGCGTGATGTCACCACGTACAGGAAAAACGCTTACGGT 8895
||| |||| ||||||| |||||| |||| || ||| ||| ||||||| |||
Sbjct 18344 GAAGGCGGCTACGTGCGCATCCAGCGTTCGATCACTACCTACCAGAAGAACGCTTTCGGC 18403
Query 8896 GTTGCGGATAACAGCTACCTCGACAGCGAGACGCTGCATACCAGC--GCGTATGTACTGC 8953
||||| ||| |||||| ||||||||||| ||||| |||| || || | |||
Sbjct 18404 CAGGCGGACAACTCCTACCTGGACAGCGAGACCCTGCA--CCAGTCGGCCTACATCGTGC 18461
Query 8954 GCAAACTGAAATCCGTCATTACCAGTAAGTACGGGCGTCACAAGCTTGCCAGCGACGGTA 9013
|| ||| || ||| || ||||| ||||||||||| |||||| | ||| ||| || |
Sbjct 18462 GCCGCCTGCAAAGCGTGATCACCAGCAAGTACGGGCGCCACAAGTTGGCCGCCGATGGCA 18521
Query 9014 CCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGTGATCAAAGGGGAACTGCTGG 9073
||||||| || |||| ||| |||| ||||||||| || || || ||| | |
Sbjct 18522 CCCGCTTCGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATTCGCGGCGAGCTGATCG 18581
Query 9074 CAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACTACGAACTTTTTAAGCAGT 9133
| ||| |||| |||| | || ||||||||| ||| || || ||
Sbjct 18582 CCCAGTACGCCAAGCTGGAGCTGGAAGGCCATGTGGAAAACGCCGAGCTGTTCGCCGAGC 18641
Query 9134 ACCTGGTTGTGGAGCGTGATGCCAGCGATCCGAACCGCCTGAACACGCTGTTCCCGCCTG 9193
||||||| ||||| || |||||| | || ||||||||| | ||| |||||||||||| |
Sbjct 18642 ACCTGGTGGTGGAACGCGATGCCCGGGACCCGAACCGCATCAACGTGCTGTTCCCGCCGG 18701
Query 9194 ACTA 9197
||||
Sbjct 18702 ACTA 18705
>seq1102
Length=22075
Score = 105 bits (116), Expect = 2e-18
Identities = 61/63 (97%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 21231 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAATAAG 21290
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215
Query 21291 TTA 21293
|||
Sbjct 2214 TTA 2212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122720585535628
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |