Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq986 944 0.0 seq997 279 1e-70 seq960 165 2e-36 seq1102 105 2e-18 >seq986 Length=30461 Score = 944 bits (1046), Expect = 0.0 Identities = 989/1297 (76%), Gaps = 2/1297 (0%) Strand=Plus/Plus Query 19794 TTTCTAAGTAAATTCTACCTATATATTCACCGAGAACACCAATCCCGATCAGTTGCACTC 19853 |||| | ||||| || || || || || ||||| |||||||| ||||| |||||||| | Sbjct 11778 TTTCGATATAAATCCTTCCAATGTACTCTCCGAGCACACCAATGCCGATAAGTTGCACAC 11837 Query 19854 CACCCAAGAAAAGTATTGATACAAGCAGGGAGGGATACCCGCGTACTGGGTTACCAAAGA 19913 |||| | |||||| || || ||||| | || ||||| || || || | || ||||| Sbjct 11838 CACCAAGGAAAAGGATGGAGACAAGTAATGACGGATAGCCACGCACAGCATTGCCAAAAG 11897 Query 19914 CAAGGGTGTCTATAATCATCCATGCACCATATAAAAATGAAATGCTTGCAACAAACAAG- 19972 | || ||||||| |||||||||||| ||||| | ||||| | | |||||| |||||| Sbjct 11898 CCAGAGTGTCTACAATCATCCATGCGCCATAGAGAAATGCGAGACCTGCAAC-AACAAGC 11956 Query 19973 CCTATATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGATACCTTCCAGTGCC 20032 || ||||| ||||| | ||| ||||| ||||| || ||||| |||||||| || || || Sbjct 11957 CCGATATAGGTCCACATGCGCAGAGGGAAGGTAGAGAAACTGGTGATACCCTCAAGAGCA 12016 Query 20033 AGATTCCATAATTTCCAGCCATTAAATTTTGAGATGCCAGCAACACGCTCTGCGCGTACA 20092 || |||||||| ||||| ||||||||||||| |||| ||||| || || ||||| || Sbjct 12017 AGGTTCCATAACTTCCAACCATTAAATTTTGTACTGCCTGCAACGCGTTCAGCGCGGGCA 12076 Query 20093 TATTCAACGACATCCGTCTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAAGATTG 20152 |||||||| |||||||| ||||||| ||||||||||| | || |||||||| || || Sbjct 12077 TATTCAACAACATCCGTGCGACCACCAACCCAGCTCAGAACTCCCTTCATGAAGAGGTTT 12136 Query 20153 CGCTCAGGCAACAGTTTAATGTTCTCCACAACCTCACGAGACATGAGTCGAAAATCTCCG 20212 | ||| |||| || || ||||| || || |||||||| ||||| || || ||||| ||| Sbjct 12137 CTCTCTGGCATGAGCTTGATGTTTTCGACCACCTCACGGGACATCAGACGGAAATCACCG 12196 Query 20213 ACATTTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAATTTATAGAACCACTCAGCT 20272 |||||||||||||||| ||| | || ||||||||||| || |||||||||||||| || Sbjct 12197 ACATTTTCCTCGATCTGCGGGTTACTGATTTTGTTGTGCAACTTATAGAACCACTCGGCA 12256 Query 20273 GTCTTACGTTTCAGTCGTCCATCAGTTGAGCGGTCTGAACGTTTAGCAAGCACCATGTCA 20332 | ||||||||||| || | |||||| |||||||| || || || || || |||||||| Sbjct 12257 GATTTACGTTTCAGACGACTATCAGTGGAGCGGTCAGAGCGCTTGGCCAGTACCATGTCG 12316 Query 20333 GCACCTGCCTGCCACTTTTCAATAAGATGAGGGATAACCTCAATTGGGTCTTGCAGGTCG 20392 || || |||||||| || || || ||||| || || |||||||||||||| |||| ||| Sbjct 12317 GCCCCGGCCTGCCATTTCTCTATCAGATGCGGAATGACCTCAATTGGGTCCTGCAAGTCT 12376 Query 20393 ACATCAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAACCCTGCAAATAAGGCTGGT 20452 || ||||| || || | || || || | || ||||||| || || ||||| || || Sbjct 12377 ACGTCAATCGGGATAATTGCTTCACCTGTAGCGTGGTCTAGGCCGGCGAATAAAGCAGGC 12436 Query 20453 TCTTTACCAAAGTTGCGTGTAAATGACAGCGGAACAACTAGCGGGTCTGAAACAGCCAGC 20512 ||||| ||||||||||| || || || || ||||| || ||||| |||| || ||| ||| Sbjct 12437 TCTTTTCCAAAGTTGCGGGTGAAGGAAAGAGGAACCACAAGCGGATCTGCAATAGCAAGC 12496 Query 20513 GCGTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCATTTATGAATACAATTTCTACT 20572 ||||| |||||||| || || |||||||| || |||||||| ||||| || || || ||| Sbjct 12497 GCGTTTATAATTGATTCGGTCGCATCTTTGCTACCGTCATTGATGAAGACTATCTCAACT 12556 Query 20573 TCATATGGCTTCAACTCTTGGAATTCACGTACCGTTTTATAGAAAACAGGTATCGCTTCT 20632 || | |||| ||| ||| || || || || | ||| ||||| | || || ||||| Sbjct 12557 TCCTGCTGCTTTAACCCTTCAAACTCCCGCACGGCTTTGTAGAAGATTGGAATTGCTTCC 12616 Query 20633 TCTTCATTGAAGACAGGAACGACAAGAGATATTTTCATTTCGCATCCCTAAAGACAATGA 20692 |||||||| || || |||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 12617 TCTTCATTAAACACCGGAACGACCAGAGAAATTTTCATTTCGCATCCCTAAAGACAATGA 12676 Query 20693 ACTTTGAATAGACGAAACCGCACACCAGACTGATGGCGGAGAAGGTGATAAGAGTGACTA 20752 |||||||||||| ||| |||||||||||||||||||||||||| ||| | || | | Sbjct 12677 ACTTTGAATAGATGAAGCCGCACACCAGACTGATGGCGGAGAAAACGATTAACGTAATAA 12736 Query 20753 TTGGAGGAAGTGAGCATTTATCAGCTGCCCAACCAACAATCACACTCAATATTCCCATAA 20812 | || | ||| |||| ||||| ||||||||| | |||| | ||||||| Sbjct 12737 TCGGGGCAAGCCCTGATTTGTCAGCACACCAACCAACGGCGGCGCTCAGCGTACCCATAA 12796 Query 20813 ATCCCACGTATAACATGTAGCGCATCGCTGTAGTCGATGCTTTGAATGTGAATCTTGCAT 20872 | || || || | |||||||||||| | || || || | || || ||||| || || | Sbjct 12797 ACCCTACATACAGCATGTAGCGCATGGTCGTTGTAGAAGACTTAAAGGTGAACCTGGCGT 12856 Query 20873 TCGCGAAGAAGCTAAAGCTCACAGCCACTACGAAACCTGTGAAGTTTGCCAGAGCCTGAC 20932 | ||||| |||||||| ||| || ||||| || || | |||||| |||||||| || | Sbjct 12857 TTGCGAAAAAGCTAAATGACACCGCAACTACAAATCCGGCGAAGTTAGCCAGAGCTTGCC 12916 Query 20933 TGGTATGTGCGGCATAGATACATACACCAAAAACCACCCAGTGTATAAGTGTGTTCAGCA 20992 || || | | || ||| | | | || || |||||||| || || ||||| | | Sbjct 12917 CTGTGTGGAAGACGTAAATAGAAATGGCGAACACAACCCAGTGAATGAGCGTGTTGATAA 12976 Query 20993 CACCTATAGATGTGTACTTTACAAATAACTTTAACATTTATTTAATCAATGAGCTCTGAA 21052 ||||||| ||||||||| | | ||||||||||||||| ||||| ||| || ||| Sbjct 12977 CACCTATTGATGTGTACCTGGCGAATAACTTTAACATTATAGAAATCAGTGAATTCGGAA 13036 Query 21053 AGGCATGAAGTCTATCATCCAAGTCTCAATTGATCGA 21089 ||| |||||| || |||| | || |||||||| Sbjct 13037 AGGTCTGAAGTGTAGCATCACACATGCACTTGATCGA 13073 >seq997 Length=29618 Score = 279 bits (308), Expect = 1e-70 Identities = 369/514 (72%), Gaps = 26/514 (5%) Strand=Plus/Minus Query 36611 AAAGGCGCATGTGATCAGCTACGGCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGG 36670 ||||||||||| |||| ||| ||||||||||| | ||||| || || || ||||||||| Sbjct 18364 AAAGGCGCATGCGATCTGCTGCGGCGCTGGACTCATGCTGGAGGCAAACAGTGGAAAGGG 18305 Query 36671 CTGA-TGACTCGCCGTGAGATTGAGCGTGAAGTCTGTTTGTGGGGGCAACAATGAGTAGA 36729 ||| | || ||||| |||| |||||| ||| |||| |||||| || |||||| || Sbjct 18304 -TGAGTAACGCGCCGGGAGAATGAGCGCGAATTCTGCATGTGGGACCATAAATGAGCTGA 18246 Query 36730 GTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTT 36789 |||||||||| |||| |||| | ||||||||| | | |||| || | ||||| || Sbjct 18245 TTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATT 18186 Query 36790 AATCATTACCGTGATAACGCCATGACCTACAAAGAACAGCGCGACAAAGCCAC------- 36842 || || || || || |||||||| ||||||||||| |||||||| |||||||| Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAA 18126 Query 36843 --------------ATCCATCATCGCTGACATGCAGAAGCGTCAACATGATGTAGCTGAA 36888 ||| |||| |||||||||| || || | ||||| |||| Sbjct 18125 CTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCG 18066 Query 36889 CTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAAAGTCTTCGT 36948 || || |||| |||||| || | |||||||| || | | || || |||| | | Sbjct 18065 CTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCAT 18006 Query 36949 GCTGATGTTTCTGCTGGTCGTAAGTGGCTGCACGTCAAAGCAGTCTGTCCGGACAAGCAT 37008 ||||| |||||| |||||| ||||||| |||| ||| |||||| | | | Sbjct 18005 AGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCC---CGCGAAC 17949 Query 37009 AAAACCACCGCCGCCTCCGGCGTGGATGATGCTTCCAGCCCCAGACTTACTGACACCGCT 37068 | | |||| | || |||| ||| ||||||||| ||||||||||||||||| ||||| Sbjct 17948 GGAGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGACTCCGCT 17889 Query 37069 CAACGGGATTATTTCGTTCTCAGAGAGCGCATCG 37102 |||||||||||||| | |||||| |||| |||| Sbjct 17888 GAACGGGATTATTTCATCCTCAGAAAGCGAATCG 17855 >seq960 Length=33163 Score = 165 bits (182), Expect = 2e-36 Identities = 292/424 (69%), Gaps = 4/424 (1%) Strand=Plus/Plus Query 8776 CGGTTCACGATGACCGAACAACAGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTC 8835 || ||||| ||||||| | ||| | ||||| | ||| | || || || || | Sbjct 18284 CGTTTCACCCTGACCGAGCGCCAGTCGCTGCTCAACTACGGCATCGCCACCGCCTACTAC 18343 Query 8836 GAAAGCGGGGTGCTGCGCATTCAGCGTGATGTCACCACGTACAGGAAAAACGCTTACGGT 8895 ||| |||| ||||||| |||||| |||| || ||| ||| ||||||| ||| Sbjct 18344 GAAGGCGGCTACGTGCGCATCCAGCGTTCGATCACTACCTACCAGAAGAACGCTTTCGGC 18403 Query 8896 GTTGCGGATAACAGCTACCTCGACAGCGAGACGCTGCATACCAGC--GCGTATGTACTGC 8953 ||||| ||| |||||| ||||||||||| ||||| |||| || || | ||| Sbjct 18404 CAGGCGGACAACTCCTACCTGGACAGCGAGACCCTGCA--CCAGTCGGCCTACATCGTGC 18461 Query 8954 GCAAACTGAAATCCGTCATTACCAGTAAGTACGGGCGTCACAAGCTTGCCAGCGACGGTA 9013 || ||| || ||| || ||||| ||||||||||| |||||| | ||| ||| || | Sbjct 18462 GCCGCCTGCAAAGCGTGATCACCAGCAAGTACGGGCGCCACAAGTTGGCCGCCGATGGCA 18521 Query 9014 CCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGTGATCAAAGGGGAACTGCTGG 9073 ||||||| || |||| ||| |||| ||||||||| || || || ||| | | Sbjct 18522 CCCGCTTCGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATTCGCGGCGAGCTGATCG 18581 Query 9074 CAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACTACGAACTTTTTAAGCAGT 9133 | ||| |||| |||| | || ||||||||| ||| || || || Sbjct 18582 CCCAGTACGCCAAGCTGGAGCTGGAAGGCCATGTGGAAAACGCCGAGCTGTTCGCCGAGC 18641 Query 9134 ACCTGGTTGTGGAGCGTGATGCCAGCGATCCGAACCGCCTGAACACGCTGTTCCCGCCTG 9193 ||||||| ||||| || |||||| | || ||||||||| | ||| |||||||||||| | Sbjct 18642 ACCTGGTGGTGGAACGCGATGCCCGGGACCCGAACCGCATCAACGTGCTGTTCCCGCCGG 18701 Query 9194 ACTA 9197 |||| Sbjct 18702 ACTA 18705 >seq1102 Length=22075 Score = 105 bits (116), Expect = 2e-18 Identities = 61/63 (97%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 21231 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAATAAG 21290 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215 Query 21291 TTA 21293 ||| Sbjct 2214 TTA 2212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122720585535628