Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_027340.1 Length=162160 Score E Sequences producing significant alignments: (Bits) Value seq974 172 6e-38 >seq974 Length=31311 Score = 172 bits (190), Expect = 6e-38 Identities = 261/364 (72%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 58398 TCAATACCACGGTTGTTCTTCAGCACGATCATGTCATCGAACTGGAAGTGCCACATCGGG 58457 |||| |||||||||||| ||||| || | || | || | | | ||||||||| ||| Sbjct 1 TCAACACCACGGTTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGG 60 Query 58458 TAATACATGGTTGCTGAGCCGCCACGGATACCACCCTGAGAACAGCTCTTCAGATCACCA 58517 || ||| ||| || | ||||| || | || |||||||| ||| || | | || Sbjct 61 TAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTAC--CGCCG 118 Query 58518 AC--GAACTTCTTGATGAACGGGATCGTACCGGTATG-AGTCATCTCACCGTCGCGGATA 58574 | ||| | ||| ||||||||| ||||| || | | | |||||| |||| || Sbjct 119 TCTGGAAGTGCTTATAGAACGGGATACAGCCGGTGTGGAATGCT-TCACCGCCGCGAATC 177 Query 58575 GAGGAACCCAGGGCACGGATAGCG-CCGAAGTCAACACCGATACCAGCACGCTTAGACAC 58633 | | ||||| |||||||| ||| ||| || | |||||||| ||||||| || || Sbjct 178 GGGCTGCCCAGCGCACGGAT-GCGACCGGCGTTGATGCCGATACCGGCACGCTGGGAAAC 236 Query 58634 GTATTTCACGATTGCGGTGCCAGTAGCAGTAATGCTGTCCAGGGTGTCACCAGACTTGAT 58693 |||||||||||| ||| || || || | ||| |||||| |||||||| ||| ||| Sbjct 237 GTATTTCACGATGGCGCTGGACGTGGCGTTGATGGAATCCAGGCTGTCACCACACTCGAT 296 Query 58694 CAGGACACATGAGCTGAACTGACGGGTACGGGTACGCACGCCTGCCATGATAGGTGTTGG 58753 ||| || || ||||||||||||||||| |||| |||||||| | |||||| || || || Sbjct 297 CAGTACGCAGGAGCTGAACTGACGGGTTGGGGTGCGCACGCCAGACATGATTGGCGTAGG 356 Query 58754 GAGA 58757 ||| Sbjct 357 CAGA 360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518772366268800