Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_027341.1 Length=130008 Score E Sequences producing significant alignments: (Bits) Value seq1512 210 2e-49 >seq1512 Length=4801 Score = 210 bits (232), Expect = 2e-49 Identities = 364/520 (70%), Gaps = 43/520 (8%) Strand=Plus/Plus Query 27237 CAATTAAAAGCAGaaatcaataaaaaa-tatcacttaatgcttgataaaaa-aataatat 27294 |||||||||| |||||| ||||||||| ||||| |||| |||| || | ||| | || Sbjct 110 CAATTAAAAGTAGAAATAAATAAAAAAATATCATCTAATATTTGACAACGATAATTA-AT 168 Query 27295 tttgatataataatatatatagaaataaaGGAGAACTAACACATGGTAGTTAAATTAACA 27354 |||| ||||||| |||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 169 TTTGGTATAATAGTATATATAGAAATAAAGGAGAACTAACAAATGGTAGTCAAATTAACG 228 Query 27355 CAAAAACAAGCTGATTATCTTAAAACTTTTGGAA-----------GACa-----aaaaaa 27398 ||||||||||||||||||||| |||||||||||| || | |||||| Sbjct 229 CAAAAACAAGCTGATTATCTTGAAACTTTTGGAAACCTTGAAGATGAAATAAACAAAAAA 288 Query 27399 CTTG-GCTTTCTATTATATTTCTCGTTGGGGTTGGGATTGTCTTCTTAAAGATGGTACag 27457 | | |||| | | | || |||||| |||| ||| ||| | | Sbjct 289 CGAGCGCTT--TGTCACATCACTCGTT----TTGG----------TTATGGATACAATTG 332 Query 27458 aaaaaacttacaaagataacgaagaaaaaccatttaatcttgatgaaaaagaaaaaatga 27517 | | | | | || | ||| | | || | | || | || || |||||| Sbjct 333 GATAGGCGGCGATAAATGTCCAAGTAGTGCTTTTGAGTGTT-ACGAGCAATTGAAAATGG 391 Query 27518 taaaTGCTCTAATTAACGGTTATGAAGTTGATGAACCTAAATATAAATTTTATAATTTTT 27577 | | ||| | |||||||||||||||||| ||||||||||| ||| |||||||| |||| Sbjct 392 TTGAAGCTGTCATTAACGGTTATGAAGTTATTGAACCTAAATTTAAGTTTTATAACTTTT 451 Query 27578 CTGATATTACCAGCGTTAGAAGATTATATTATACAGGGAAAAATAGACAATTCACTGAAA 27637 |||||| || | | | | |||||||||| | || | || |||||| || ||| Sbjct 452 CTGATAGTAGCGGAGGAACTGCATTATATTATGCTGGACAGTCTAAACAATTAAC--AAA 509 Query 27638 ATT--ATTTTGAAGGTAAAGATATTGAAAAGGATAGCGTTGAATATTTAGCTTTGGAAAG 27695 ||| | || | | || || || ||| |||| |||||| ||||||| | Sbjct 510 ATTCGAGCAAGATGCTCTTGAAGTTAAAGAGGGGAGCGAGGAATATAAAGCTTTGTTAGC 569 Query 27696 TTTAGGCTTTCG-TAAAGAAGAAGTATGATAACATCTTTT 27734 |||||| ||||| | ||||||||||||||||||||||||| Sbjct 570 TTTAGG-TTTCGTTGAAGAAGAAGTATGATAACATCTTTT 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415891706588946