Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq236 196 5e-45 seq637 149 7e-31 seq895 87.8 2e-12 >seq236 Length=545527 Score = 196 bits (216), Expect = 5e-45 Identities = 153/183 (84%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 60698 TTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 60757 ||||| || |||||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct 30895 TTACAGGCTTTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGA 30836 Query 60758 GTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 60817 ||| ||||| || ||||| || || || || |||||||||||||| |||||||| || || Sbjct 30835 GTTGAAGCGTACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTG 30776 Query 60818 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACC 60877 || ||| || || ||| ||||| || ||||| ||||||||||| ||||| |||||||| Sbjct 30775 CTCAACCGCGTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACC 30716 Query 60878 CTC 60880 || Sbjct 30715 TTC 30713 >seq637 Length=122170 Score = 149 bits (164), Expect = 7e-31 Identities = 139/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 60707 CTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 60766 || ||| || ||||| | ||||||||| |||||||||| |||||| |||||||| || Sbjct 107115 CTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACG 107174 Query 60767 AACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 60826 ||||| || || |||||||||||||||||||| |||||||| || ||||| | | || Sbjct 107175 TACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGC 107234 Query 60827 ATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCCTCAAT 60883 ||| ||| ||||||| || ||||| ||||||||||| |||||||| || || Sbjct 107235 ATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTCGAT 107291 >seq895 Length=39754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60711 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60770 ||||| || || | || || || ||||||| || | ||||| | ||||| || || Sbjct 11880 GTAAACGTTCGCGAAATCACATCCTGCTGCTGCTCGCGCGTCAGGGCATTAAACCGCACC 11939 Query 60771 GCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60830 ||||| || || || ||||||||||| | ||| || || || |||||| || ||||| Sbjct 11940 GCATAGCCCGAGACGCGGATGGTCAGGTTCGGGTAGTTCTCGGGATGCGCAATGGCATCG 11999 Query 60831 TCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCCTCAAT 60883 || | || || || ||||| ||||||||||| || || |||||||| Sbjct 12000 AGGAGCATCTCCCGGTTCATCACGTTAACGTTCAGGTGCTGCCCGCCCTCAAT 12052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534186420600880