Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_027350.1 Length=49816 Score E Sequences producing significant alignments: (Bits) Value seq997 87.8 6e-13 >seq997 Length=29618 Score = 87.8 bits (96), Expect = 6e-13 Identities = 213/323 (66%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 11269 CTGGAATCGCAAGCCGCCGCTCTTGGCAAAACAAAAGCCGAATTGCTGGAAATGAAAGCG 11328 |||||| ||| | | | || | || ||||| || ||| || | || | ||||| Sbjct 4722 CTGGAAGAGCAGGTCACAGCAATCGGAAAAACGCGCGCAGAACTGTTAGAGCTAAAAGCA 4663 Query 11329 GCGCAACTTGGCGTAAGTGCTCAGGCAGCGCCATTCATTGCACAGCTTAAAGCGCAAGAA 11388 || ||||||||||| | || || || || | || || | || |||| ||| || Sbjct 4662 GCCCAACTTGGCGTGTCCGATCGTGCTGCACCGATGATCGCCCGACTGAAAGAGCAGGAG 4603 Query 11389 AAACAGATGAATTTAACCGGAATTAGCGCAGGGCAATATAACCAGGCAATGCGAATGCTT 11448 || | ||| | | | || ||||| |||||||| | | || ||||| || Sbjct 4602 GAAGCGTGGAAGTCAGGAGCGATCAGCGCGGGGCAATACCGCAACGCGATGCGTTATCTC 4543 Query 11449 CCGGCTCAGATCACTGACGTTGTAACGTCGCTGGCTTCCGGTATGCCTGTTTGGTTGGTT 11508 ||| || || || ||| |||| || || ||||| ||||||||||| |||| |||| Sbjct 4542 CCGATGCAAATGACCGACATTGTGACCTCACTGGCGTCCGGTATGCCGGTTTATATGGTG 4483 Query 11509 GCAATCCAGCAGGGTGGACAGATTAAAGATTCTTTCGGCGGCGTTGGTAATACGTTTAAA 11568 || || |||||||| || ||| | ||||| || ||||| || ||| | | ||| Sbjct 4482 GCCATTCAGCAGGGCGGCCAGCTGCGCGATTCGTTTGGCGGTGTAAACAATGCTCTGAAA 4423 Query 11569 GTGCTGTTGTCGTTTCTGAATCC 11591 | | |||||||| | ||| ||| Sbjct 4422 GCGATGTTGTCGATGGTGACTCC 4400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159286206534184