Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_027404.1 Length=167785 Score E Sequences producing significant alignments: (Bits) Value seq236 199 4e-46 seq637 150 2e-31 seq895 84.2 2e-11 >seq236 Length=545527 Score = 199 bits (220), Expect = 4e-46 Identities = 154/183 (84%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 61046 TTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 61105 ||||| || || ||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct 30895 TTACAGGCTTTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGA 30836 Query 61106 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 61165 ||| ||||| || |||||||| || || || |||||||||||||| |||||||| || || Sbjct 30835 GTTGAAGCGTACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTG 30776 Query 61166 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACC 61225 || ||| || || ||| ||||| || ||||| ||||||||||| ||||| |||||||| Sbjct 30775 CTCAACCGCGTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACC 30716 Query 61226 TTC 61228 ||| Sbjct 30715 TTC 30713 >seq637 Length=122170 Score = 150 bits (166), Expect = 2e-31 Identities = 137/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 61059 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61118 || || ||||| | ||||||||| |||||||||| |||||| |||||||| || ||| Sbjct 107119 GTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACGTACT 107178 Query 61119 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61178 || || || |||||||||||||||||||| |||||||| || ||||| | | ||||| Sbjct 107179 GCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGCATCG 107238 Query 61179 TCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAAT 61231 ||| ||||||| || ||||| ||||||||||| ||||||||||| || Sbjct 107239 AGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTCGAT 107291 >seq895 Length=39754 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 61058 GGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 61117 |||||| || || | || || || ||||||| || | ||||| | ||||| || || Sbjct 11879 GGTAAACGTTCGCGAAATCACATCCTGCTGCTGCTCGCGCGTCAGGGCATTAAACCGCAC 11938 Query 61118 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 61177 ||||| || || || ||||||||||| | ||| || || || |||||| || ||||| Sbjct 11939 CGCATAGCCCGAGACGCGGATGGTCAGGTTCGGGTAGTTCTCGGGATGCGCAATGGCATC 11998 Query 61178 TTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAAT 61231 || | || || || ||||| ||||||||||| || || || ||||| Sbjct 11999 GAGGAGCATCTCCCGGTTCATCACGTTAACGTTCAGGTGCTGCCCGCCCTCAAT 12052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536771962618800