Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_027987.1 Length=29508 Score E Sequences producing significant alignments: (Bits) Value seq1512 161 2e-35 >seq1512 Length=4801 Score = 161 bits (178), Expect = 2e-35 Identities = 326/484 (67%), Gaps = 0/484 (0%) Strand=Plus/Plus Query 1709 AATGATTAAACTAGATGAAAAGAAAATACGCAAAGGTAAAGCAGTTGGGCTTCCTTATGT 1768 |||| ||| |||| || |||||||| | ||||||||| | |||| | || || Sbjct 3725 AATGCTTAGTTTAGACGAGAAGAAAATCAGAAAAGGTAAACCTATTGGATTACCATACCA 3784 Query 1769 TGGTAGTAAAAAGAAAATCAGTAAAAAGATTGTTGAAATAATTAAACAAAACTTTGGCAC 1828 || || || || || || || || || || ||||| || || ||||| ||||||||||| Sbjct 3785 AGGAAGCAAGAAAAAGATAAGCAAGAAAATAGTTGAGATTATCAAACAGAACTTTGGCAC 3844 Query 1829 AGATAAGACAGTTTATGACGTATTCGGTGGCGGTGGTGCAATTACTGCTGAACTAATGAT 1888 ||| ||| | | || ||| | ||||| || || || |||||||| | ||| || | Sbjct 3845 AGACAAGCCGATATACGACATCTTCGGAGGAGGCGGAGCAATTACATCCGAATGTATTTT 3904 Query 1889 TAACGGTATAGATGTTGTTTATAATGACTTAGATAAAACAATTACTGACATGTTTAACCG 1948 || || |||| || |||||| |||||||| || || || || ||| | || Sbjct 3905 AAATGGCTTAGAAGTATATTATAACGACTTAGACAAGGATATAACCAACGCTTTTGAACG 3964 Query 1949 TGTTTTAAGCCAAGATAGAGAATGGATCAAAACATTAATTGTTAGTCGTGATGAGTTCTT 2008 ||| | ||||| | || ||||| |||| | |||||| ||| ||||| Sbjct 3965 AGTTATCTCTCAAGACCGTGAGTGGATTAAAAGCCTTATTGTTTCACGTACAGAGTTTAC 4024 Query 2009 AAATATTAGAGATAAAGAAAACAAAACAGTTGATGACGAATTGAAGTTGTTAGTCAATAG 2068 | |||| || ||||||||||| ||| |||||| ||||||||| | | || Sbjct 4025 CGAGATTAAGGAGAAAGAAAACAAGACAACAGATGACTTTTTGAAGTTGCTGATTAACTC 4084 Query 2069 TTTTGGTAATAATAGAATAGGATATTTATATAGTAATGAGATTAGCGATATAAAGTATAA 2128 ||| |||||||| | | || ||||||||| ||| || ||| ||| |||| ||||| Sbjct 4085 TTTCGGTAATAAAAAGAGAGATTATTTATATTCTAAAGAAATTTCAGATTTAAAATATAA 4144 Query 2129 GCTGGTTGTTGAAATTATTGAAAACGAAGACACTTTTAAAAAATATAAGCAAACAGAAAC 2188 || | | ||||| |||||||| | ||| ||||| ||||| || || |||| Sbjct 4145 TCTAGCTAAAGAAATAATTGAAAAGCATGACGTTTTTAGTGGTTATAAACAGACCAAAAC 4204 Query 2189 TTAT 2192 ||| Sbjct 4205 ATAT 4208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94301990971160