Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq486 194 2e-44
>seq486
Length=217039
Score = 194 bits (214), Expect = 2e-44
Identities = 905/1408 (64%), Gaps = 44/1408 (3%)
Strand=Plus/Plus
Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757
|||||| |||| ||||||| ||| |||| ||||| ||||||| || || | || ||
Sbjct 175133 TCTTCTTTGGTAAATGTTTGAAGTGAATGGCTCAAATGATTCATTGTTGCCAAGAATCTG 175192
Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTT 110817
||| |||||||| || ||||| || |||| ||| ||| ||| || || || | | |
Sbjct 175193 TGCAGTGGAGGCGGTGGGCATGGGGGCCAGCAACAGAGAGTTCCGCAGGCCATGTTTCGC 175252
Query 110818 GATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATG 110875
||| | ||| ||| || |||||| | | | | | ||| || | |||||||
Sbjct 175253 GATCTTCTGCTTCAGAGCACTCCAGTCCCACAGGTCTG-TGGGTGTCTT-TCCCCACATT 175310
Query 110876 TCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGG 110935
||| | || | | |||| || ||| |||| || | |||||||| || |
Sbjct 175311 TCATATTGCAATATTCCTTCACTGGCCGGACAACCAGCATACGTTTCATAAACGCCGAGT 175370
Query 110936 GCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGA 110995
||| |||| ||||||||| || || | | | | ||| ||||||||||| || |
Sbjct 175371 TTTTCGGCCAGTTCACAGCTAGCTTCTAAAGCCCCATAATAGATGGTTTCAAATATTTGT 175430
Query 110996 GCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATC 111054
||| | || || |||| | || || | | | || ||| ||| | ||| ||||
Sbjct 175431 TGATTGAGCTTCTGGGCTCCTTCACTCTCGTAAG-GAAGGCGCATCAATACAAAAGCATC 175489
Query 111055 CGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGT 111114
|| |||||||| || || | || ||||||| ||| | ||| ||||||||| ||| |
Sbjct 175490 GGCCAGACCTTGGACGCCAATGCCGATAGGTCGGTGCCTCATGTTAGACTTTTTCGCT-T 175548
Query 111115 CTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG 111173
|| |||||||| |||| || || | ||| || || | || | || || |
Sbjct 175549 CTGGGACGGGATAGTAATTAACATCGATAATCTTGTTCAGGTTCTCAGTTATGATTTTGG 175608
Query 111174 TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAA 111233
| | || | ||||| ||| ||||| | || | | ||| | ||| || | |
Sbjct 175609 TCACTTGTTTTAGTTTCTCAAAATCATATGTTTTATT---TTCGGTTACAAACATGTTGA 175665
Query 111234 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 111293
|| ||||| ||||| ||||||||||| ||||| | ||||||||| | ||| |
Sbjct 175666 CAGCAATTGACGCCAAGTTGCAAACAGCTACTTCATCAGCAGATGTGTACTCAACAATCT 175725
Query 111294 CTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGC 111353
| || |||| ||| | || || || |||||||||||||| || ||||| ||||||
Sbjct 175726 CCGTGCATAGATTGCTGCATTTGATGGTTCCCAAATTCTTTTGATTGCTCTTTCTGTTGC 175785
Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCT 111413
| ||||| ||||| |||||||| || || || ||||| |||| | | ||||||||
Sbjct 175786 ATGCATCTTTGTAAAGCATGTATGGAGTTCCAGTCTCTACTTGTGCCTCAATAATAGCCT 175845
Query 111414 TCCA-AACATCGGCGGCTGGTACAATGGCGTTGGC---CCGTCCCTCCGCCTCGTACTTT 111469
|||| | || | || | || | || | || || || || || |||
Sbjct 175846 TCCATAGGATTTG-AGCGCGGACTTT---TTTAACAAACCTACCTTCTTGTTCATA-TTT 175900
Query 111470 GTG-TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528
|| || | || ||||| || || ||| || | | || || | || ||
Sbjct 175901 CTGATATAATGCATCAAATTCATCTCCCCAACAATCAGCCAAGCCAGGGCTGTCGTGAGG 175960
Query 111529 ACAGAAAAGAGACCATTGACCACCT--TCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586
|| | ||| ||| | || | | | |||||||| ||||||||| || |||| |||
Sbjct 175961 GCACATAAGGCTCCACT--CCTCGTTGTTCTCAACCCTCTTCATGAATAGATCTGAGATC 176018
Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AA 111645
||||| | | || || |||| || | || || | || ||| || | ||
Sbjct 176019 CACAGAGCATAGAACAGCTCTCGCGCGCGCACTTCCTCTTTGCCCGTGTT-CTTCTTCAA 176077
Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC--- 111702
|| |||||||| | || || |||||||| ||||| || ||||| |||| | ||
Sbjct 176078 GTCTAGGAACTCGAATATGTCAGCGTGCCACGGCTCGAGGTAGACGGCGAAGGCGCCGGG 176137
Query 111703 ---CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758
||| | | ||||| || | || |||||||| ||| ||| | ||||| ||||
Sbjct 176138 CCGCTTGTTGCCGCCC----TGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCA 176193
Query 111759 TTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCT 111816
| || | | || | || || || || ||| ||| || | | | || |||||
Sbjct 176194 TGGGCACCAGCCCGTTGGAGACGCCGTTCGTGCCCGCGATGTAGGTGCCT--TTCGCTCT 176251
Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876
| ||| | || | || || || || || | || || ||| ||||||| | |
Sbjct 176252 GATGCAATGAACATGAACTCCTATGCCGCCCGCGGATTTGGATATTAATGCACACTGCTT 176311
Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 111936
||||| | |||||||| | ||| ||| ||||| ||||||| ||||| || |||
Sbjct 176312 CAGAGTGTCGTAGATACCTTCGATGCTGTCGTCCTTCATGGCGATGAGGAAACATGAGGA 176371
Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996
| ||| || | || || | || ||| ||||| || | ||||| |||| |||
Sbjct 176372 GAGCTGAGGGCGGGGGGTGGCGGCCGAGAACAGGGTGGGGCTGGCGTGCGTGAA-GTACT 176430
Query 111997 T-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 112055
| | ||| | | || ||| || | | | | || ||||| | |||||||||||||
Sbjct 176431 TCTCGGAGAGCAGGTTGTAGGTGGTGATGGCGGCGTCGATGTCGGCGCCGTGGATGCCGA 176490
Query 112056 TTGCGACCCGCATGAACATGTACTGTGG 112083
| | |||||||| | ||||| ||| ||
Sbjct 176491 TGGACACCCGCATCAGCATGTGCTGCGG 176518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628017916382400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |