Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq486 194 2e-44 >seq486 Length=217039 Score = 194 bits (214), Expect = 2e-44 Identities = 905/1408 (64%), Gaps = 44/1408 (3%) Strand=Plus/Plus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 |||||| |||| ||||||| ||| |||| ||||| ||||||| || || | || || Sbjct 175133 TCTTCTTTGGTAAATGTTTGAAGTGAATGGCTCAAATGATTCATTGTTGCCAAGAATCTG 175192 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTT 110817 ||| |||||||| || ||||| || |||| ||| ||| ||| || || || | | | Sbjct 175193 TGCAGTGGAGGCGGTGGGCATGGGGGCCAGCAACAGAGAGTTCCGCAGGCCATGTTTCGC 175252 Query 110818 GATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATG 110875 ||| | ||| ||| || |||||| | | | | | ||| || | ||||||| Sbjct 175253 GATCTTCTGCTTCAGAGCACTCCAGTCCCACAGGTCTG-TGGGTGTCTT-TCCCCACATT 175310 Query 110876 TCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGG 110935 ||| | || | | |||| || ||| |||| || | |||||||| || | Sbjct 175311 TCATATTGCAATATTCCTTCACTGGCCGGACAACCAGCATACGTTTCATAAACGCCGAGT 175370 Query 110936 GCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGA 110995 ||| |||| ||||||||| || || | | | | ||| ||||||||||| || | Sbjct 175371 TTTTCGGCCAGTTCACAGCTAGCTTCTAAAGCCCCATAATAGATGGTTTCAAATATTTGT 175430 Query 110996 GCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATC 111054 ||| | || || |||| | || || | | | || ||| ||| | ||| |||| Sbjct 175431 TGATTGAGCTTCTGGGCTCCTTCACTCTCGTAAG-GAAGGCGCATCAATACAAAAGCATC 175489 Query 111055 CGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGT 111114 || |||||||| || || | || ||||||| ||| | ||| ||||||||| ||| | Sbjct 175490 GGCCAGACCTTGGACGCCAATGCCGATAGGTCGGTGCCTCATGTTAGACTTTTTCGCT-T 175548 Query 111115 CTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG 111173 || |||||||| |||| || || | ||| || || | || | || || | Sbjct 175549 CTGGGACGGGATAGTAATTAACATCGATAATCTTGTTCAGGTTCTCAGTTATGATTTTGG 175608 Query 111174 TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAA 111233 | | || | ||||| ||| ||||| | || | | ||| | ||| || | | Sbjct 175609 TCACTTGTTTTAGTTTCTCAAAATCATATGTTTTATT---TTCGGTTACAAACATGTTGA 175665 Query 111234 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 111293 || ||||| ||||| ||||||||||| ||||| | ||||||||| | ||| | Sbjct 175666 CAGCAATTGACGCCAAGTTGCAAACAGCTACTTCATCAGCAGATGTGTACTCAACAATCT 175725 Query 111294 CTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGC 111353 | || |||| ||| | || || || |||||||||||||| || ||||| |||||| Sbjct 175726 CCGTGCATAGATTGCTGCATTTGATGGTTCCCAAATTCTTTTGATTGCTCTTTCTGTTGC 175785 Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCT 111413 | ||||| ||||| |||||||| || || || ||||| |||| | | |||||||| Sbjct 175786 ATGCATCTTTGTAAAGCATGTATGGAGTTCCAGTCTCTACTTGTGCCTCAATAATAGCCT 175845 Query 111414 TCCA-AACATCGGCGGCTGGTACAATGGCGTTGGC---CCGTCCCTCCGCCTCGTACTTT 111469 |||| | || | || | || | || | || || || || || ||| Sbjct 175846 TCCATAGGATTTG-AGCGCGGACTTT---TTTAACAAACCTACCTTCTTGTTCATA-TTT 175900 Query 111470 GTG-TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528 || || | || ||||| || || ||| || | | || || | || || Sbjct 175901 CTGATATAATGCATCAAATTCATCTCCCCAACAATCAGCCAAGCCAGGGCTGTCGTGAGG 175960 Query 111529 ACAGAAAAGAGACCATTGACCACCT--TCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 || | ||| ||| | || | | | |||||||| ||||||||| || |||| ||| Sbjct 175961 GCACATAAGGCTCCACT--CCTCGTTGTTCTCAACCCTCTTCATGAATAGATCTGAGATC 176018 Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AA 111645 ||||| | | || || |||| || | || || | || ||| || | || Sbjct 176019 CACAGAGCATAGAACAGCTCTCGCGCGCGCACTTCCTCTTTGCCCGTGTT-CTTCTTCAA 176077 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC--- 111702 || |||||||| | || || |||||||| ||||| || ||||| |||| | || Sbjct 176078 GTCTAGGAACTCGAATATGTCAGCGTGCCACGGCTCGAGGTAGACGGCGAAGGCGCCGGG 176137 Query 111703 ---CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 ||| | | ||||| || | || |||||||| ||| ||| | ||||| |||| Sbjct 176138 CCGCTTGTTGCCGCCC----TGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCA 176193 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCT 111816 | || | | || | || || || || ||| ||| || | | | || ||||| Sbjct 176194 TGGGCACCAGCCCGTTGGAGACGCCGTTCGTGCCCGCGATGTAGGTGCCT--TTCGCTCT 176251 Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876 | ||| | || | || || || || || | || || ||| ||||||| | | Sbjct 176252 GATGCAATGAACATGAACTCCTATGCCGCCCGCGGATTTGGATATTAATGCACACTGCTT 176311 Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 111936 ||||| | |||||||| | ||| ||| ||||| ||||||| ||||| || ||| Sbjct 176312 CAGAGTGTCGTAGATACCTTCGATGCTGTCGTCCTTCATGGCGATGAGGAAACATGAGGA 176371 Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 | ||| || | || || | || ||| ||||| || | ||||| |||| ||| Sbjct 176372 GAGCTGAGGGCGGGGGGTGGCGGCCGAGAACAGGGTGGGGCTGGCGTGCGTGAA-GTACT 176430 Query 111997 T-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 112055 | | ||| | | || ||| || | | | | || ||||| | ||||||||||||| Sbjct 176431 TCTCGGAGAGCAGGTTGTAGGTGGTGATGGCGGCGTCGATGTCGGCGCCGTGGATGCCGA 176490 Query 112056 TTGCGACCCGCATGAACATGTACTGTGG 112083 | | |||||||| | ||||| ||| || Sbjct 176491 TGGACACCCGCATCAGCATGTGCTGCGG 176518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628017916382400