Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq486 122 1e-22 >seq486 Length=217039 Score = 122 bits (134), Expect = 1e-22 Identities = 866/1376 (63%), Gaps = 38/1376 (3%) Strand=Plus/Plus Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||| |||||||||| | |||||||| || | || || || |||||||| ||||||||| Sbjct 175155 GTGAATGGCTCAAATGATTCATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCATG 175214 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCC 118313 || |||| | || ||| || || || | || | || | ||| ||||| | Sbjct 175215 GGGGCCAGCAACAGAGAGTTCCGCAGGCCATGTTTCGCGATCTTCTGCTTCAGAGCACTC 175274 Query 118314 CAGTCGTA---GT-TGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTG 118369 ||||| | || || | | |||| ||| ||||| ||| | || | || |||| Sbjct 175275 CAGTCCCACAGGTCTGTGGGT-GTCTTTCCC---CACATTTCATATTGCAATATTCCTTC 175330 Query 118370 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT 118429 || || | || || | || ||||| ||| || |||| ||| |||| Sbjct 175331 ACTGGCCGGACAACCAGCATACGTTTCATAAACGCCGAGTTTTTCGGCCAGTTCACAGCT 175390 Query 118430 CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 118489 || || | || | | ||| || |||||||| || | ||| | || ||| | Sbjct 175391 AGCTTCTAAAGCCCCATAATAGATGGTTTCAAATATTTGTTGATTGAGCTTCTGGGCTCC 175450 Query 118490 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 118549 || || | | || || ||| | ||| |||| || ||||||||||| || | Sbjct 175451 TTCACTCTCGTAAGGAAGGCGCATCAATACAAAAGCATCGGCCAGACCTTGGACGCCAAT 175510 Query 118550 GCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC-ACGGGATAAAAATTCC 118608 ||| || || || || ||||| |||||||| || ||| |||||||| |||| Sbjct 175511 GCCGATAGGTCGGTGCCTCATGTTAGACTTTTTCGCT-TCTGGGACGGGATAGTAATTAA 175569 Query 118609 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 118668 |||||||| | | || || || | || | | || || | || | || || || Sbjct 175570 CATCGATAATCTTGTTCAGGTTCTCAGTTATGATTTTGGTCACTTGTTTTAGTTTCTCAA 175629 Query 118669 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 118728 ||||| | | | | ||| | ||| || | | || |||||||||| || | Sbjct 175630 AATCATATGTTTTATT---TTCGGTTACAAACATGTTGACAGCAATTGACGCCAAGTTGC 175686 Query 118729 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCT 118788 | |||| ||||| | |||||||| | ||| |||||||| | || | | Sbjct 175687 AAACAGCTACTTCATCAGCAGATGTGTACTCAACAATCTCCGTGCATAGATTGCTGCATT 175746 Query 118789 TAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGT 118848 | ||||| ||||| ||||||||||| |||| |||| || ||||| ||||||||||||| Sbjct 175747 TGATGGTTCCCAAATTCTTTTGATTGCTCTTTCTGTTGCATGCATCTTTGTAAAGCATGT 175806 Query 118849 ATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGC 118907 |||| || || ||||| ||| | || | |||||||||||| | || | ||| | Sbjct 175807 ATGGAGTTCCAGTCTCTACTTGTGCCTCAATAATAGCCTTCCATAGGATTTG-AGCGCGG 175865 Query 118908 ACAGTGGCGTTGGC---TCGCCCCTCTTCCTCGTACTTTGTG-TAGAGGGCTTCAAACTC 118963 || | || | | || |||| || || ||| || || | || ||||| || Sbjct 175866 ACTTT---TTTAACAAACCTACCTTCTTGTTCATA-TTTCTGATATAATGCATCAAATTC 175921 Query 118964 TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACC 119023 || ||| || | | || || | | ||||| | || ||| | | Sbjct 175922 ATCTCCCCAACAATCAGCCAAGCCAGGGCTGTCGTGAGGGCACATAAGGCTCCACTCCTC 175981 Query 119024 ACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 119083 | |||||||| ||||||||| || |||| |||||| || || |||| || || || Sbjct 175982 GTTGTTCTCAACCCTCTTCATGAATAGATCTGAGATCCACAGAGCATAGAACAGCTCTCG 176041 Query 119084 ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 119143 ||| |||| || | ||| || ||| || | || || | || || || Sbjct 176042 CGCGCGCACTTCCTCTTTGCCCGTGTTCTTCTTCAAGTCTAGGAACTCGAATATGTCAGC 176101 Query 119144 GTGCCACGGTTCCAGGTACACCGCGA------TTGACCCCTTACGACGACCAGCCTGGTT 119197 ||||||||| || ||||| || |||| | || ||| | | || |||||| Sbjct 176102 GTGCCACGGCTCGAGGTAGACGGCGAAGGCGCCGGGCCGCTT--GTTG-CCGCCCTGGTC 176158 Query 119198 TACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCC 119257 || || | ||| ||| ||| | || || ||||| || | | || | ||| ||| Sbjct 176159 CACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGCCCGTTGGAGACGCC 176218 Query 119258 ATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATA 119315 || || ||| ||| || | | || || ||||||| || | || | || || Sbjct 176219 GTTCGTGCCCGCGATGTAGGTGCCT--TTCGCTCTGATGCAATGAACATGAACTCCTATG 176276 Query 119316 CCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATC 119375 || || || | || || ||| || |||| | | ||| || ||||||| || ||||| Sbjct 176277 CCGCCCGCGGATTTGGATATTAATGCACACTGCTTCAGAGTGTCGTAGATACCTTCGATG 176336 Query 119376 GAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCG 119435 ||| |||| | ||||||||||| || || | ||||| | ||| || | || Sbjct 176337 CTGTCGTCCTTCATGGCGATGAGGAAACATGAGGAGAGCTGAGGGCGGGGGGTGGCGGCC 176396 Query 119436 TTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTC 119494 ||| || || || | ||||| |||| ||| | | ||| | | || |||||| Sbjct 176397 GAGAACAGGGTGGGGCTGGCGTGCGTGAA-GTACTTCTCGGAGAGCAGGTTGTAGGTGGT 176455 Query 119495 CAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGT 119550 | | ||||| ||||| | ||||| || ||||| || |||||||| | ||||| Sbjct 176456 GATGGCGGCGTCGATGTCGGCGCCGTGGATGCCGATGGACACCCGCATCAGCATGT 176511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618421331590640