Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq486 203 4e-47 >seq486 Length=217039 Score = 203 bits (224), Expect = 4e-47 Identities = 1040/1635 (64%), Gaps = 30/1635 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||| ||| ||||||| || || || | ||||| || | | | Sbjct 176518 CCGCAGCACATGCTGATGCGGGTGTCCATCGGCATCCACGGCGCCGACATCGACGCCGCC 176459 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | || ||| || | | ||| | | ||| |||| ||||| | || ||||| || Sbjct 176458 ATCACCACCTACAACCTGCTCTCCGAGAAGTAC-TTCACGCACGCCAGCCCCACCCTGTT 176400 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 | || | || || | || || | ||| || ||||| ||||||| ||||| || Sbjct 176399 CTCGGCCGCCACCCCCCGCCCTCAGCTCTCCTCATGTTTCCTCATCGCCATGAAGGACGA 176340 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | |||||||| | ||||| | | ||||||| ||| || || | || || Sbjct 176339 CAGCATCGAAGGTATCTACGACACTCTGAAGCAGTGTGCATTAATATCCAAATCCGCGGG 176280 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518 || || || | || | ||| | ||||| || | | | || ||| ||| || Sbjct 176279 CGGCATAGGAGTTCATGTTCATTGCATCAGAGCGAA--AGGCACCTACATCGCGGGCACG 176222 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || || | || | | || ||||| ||||| | ||| ||| |||||||| Sbjct 176221 AACGGCGTCTCCAACGGGCTGGTGCCCATGCTGCGCGTGTACAACAACACGGCGCGCTAC 176162 Query 104579 GTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGAGCCATG 104631 || | || ||||| | | ||| || | |||| ||||| || ||||| || Sbjct 176161 GTGGACCA----GGGCGGCAACAAGCGGCCCGGCGCCTTCGCCGTCTACCTCGAGCCGTG 176106 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| || || | |||||||| || ||| ||| || | ||||| | ||| Sbjct 176105 GCACGCTGACATATTCGAGTTCCTAGACTTGAAGAAGAACACGGGCAAAGAGGAAGTGCG 176046 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 || || || |||| ||||| ||||| ||||||| ||||||||||| |||||| | Sbjct 176045 CGCGCGAGAGCTGTTCTATGCTCTGTGGATCTCAGATCTATTCATGAAGAGGGTTGAGAA 175986 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 | | | ||| || | || || || | ||||| | | ||| ||| Sbjct 175985 CAACGAGGAGTGGAGCCTTATGTGCCCTCACGACAGCCCTGGCTTGGCTGATTGTTGGGG 175926 Query 104812 TGAGGAGTTTGAAGCCCTTTA-CACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 || || ||||| || | || || ||| || || |||||||| || | | | Sbjct 175925 AGATGAATTTGATGCATTATATCAGAAA-TATGAACAAGAAGGTAGGTTTGTTAAAAAAG 175867 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | | ||| | || | ||||| |||||| | || | ||| |||||||| || ||| Sbjct 175866 TCCGCGCT-CAAATCCTATGGAAGGCTATTATTGAGGCACAAGTAGAGACTGGAACTCCA 175808 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 ||||||||||||||||| || || ||| |||||| ||||||||||||||||| ||| Sbjct 175807 TACATGCTTTACAAAGATGCATGCAACAGAAAGAGCAATCAAAAGAATTTGGGAACCATC 175748 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 || | |||||| || || || || | || | ||| ||||| ||||| Sbjct 175747 AAATGCAGCAATCTATGCACGGAGATTGTTGAGTACACATCTGCTGATGAAGTAGCTGTT 175688 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 105109 || ||| | || ||||| ||| || || || ||| | || || | || |||| |||| Sbjct 175687 TGCAACTTGGCGTCAATTGCTGTCAACATGTTTGT--AACC-GAAAATAAAACATATGAT 175631 Query 105110 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGAT 105169 | ||| ||||| | |||| || |||| | || | ||||| |||| |||| ||| Sbjct 175630 TTTGAGAAACTAAAACAAGTGACCAAAATCATAACTGAGAACCTGAACAAGATTATCGAT 175571 Query 105170 AGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 |||| || ||||| ||| || || ||||| ||||| ||||| || || || Sbjct 175570 GTTAATTACTATCCCGTCCCAGA-AGCGAAAAAGTCTAACATGAGGCACCGACCTATCGG 175512 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 105288 | || || || ||||| || |||| || | | |||| | | || || Sbjct 175511 CATTGGCGTCCAAGGTCTGGCCGATGCTTTTGTATTGATGCGCCTTCCTTACGAGAGTGA 175452 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 | ||| || | ||||| | |||||||| ||||| ||| | | ||| | || || Sbjct 175451 AGGAGCCCAGAAGCTCAATCAACAAATATTTGAAACCATCTATTATGGGGCTTTAGAAGC 175392 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 || | || |||| || || |||||||| | || |||| ||| || Sbjct 175391 TAGCTGTGAACTGGCCGAAAAACTCGGCGTTTATGAAACGTATGCTGGTTGTCCGGCCAG 175332 Query 105409 ACAAGGGGTGCTTCAATTTGATATGT-GGGAAGGTGAGACCAAGCTTCACTACGACTGGG 105467 |||| | | |||| ||| |||| ||||| | | ||| | | |||||| Sbjct 175331 TGAAGGAATATTGCAATATGAAATGTGGGGAAAGACA-CCCACAGACCTGTGGGACTGGA 175273 Query 105468 AAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAA 105527 ||||| ||| | ||| | | | || || || ||| ||| | |||| || | Sbjct 175272 GTGCTCTGAAGCAGAAGATCGCGAAACATGGCCTGCGGAACTCTCTGTTGCTGGCCCCCA 175213 Query 105528 TGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGA 105587 |||| || |||||||| ||||| || | || || ||||||| ||||| || | ||| Sbjct 175212 TGCCCACCGCCTCCACTGCACAGATTCTTGGCAACAATGAATCATTTGAGCCATTCACTT 175153 Query 105588 CGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCG 105647 | ||||| || | |||||| || | ||||| || | | |||||| | || || Sbjct 175152 CAAACATTTACCAAAGAAGAGTTCTTTCTGGAGAATTCCAGGTGGTCAACCATCACCTGC 175093 Query 105648 TGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAG 105707 | || |||| ||| || | | ||| | |||||||| ||||||| | | Sbjct 175092 TTCGCGATCTCACCGAGGCTGATTTATGGGATGATGATATGAAAAATCTCATTATACACA 175033 Query 105708 CGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA-AGTTGTACCGC 105766 ||| |||||||| ||||| |||||| || |||| ||||| | | ||| Sbjct 175032 ACAATGGATCCATTCAGTCTATTGAAAGTATTCCCAAAGAAA-TAAGAGATCTTTACAAG 174974 Query 105767 ACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 105826 || || ||||| || ||||| || | |||||||| ||||||||| ||| Sbjct 174973 ACTGTGTGGGAGATATCTGTGAAGACCACAATCCAAATGGCCGCGGATCGTGGTGCTTTC 174914 Query 105827 ATTGATCAAAGTCAA 105841 ||||| || |||||| Sbjct 174913 ATTGACCAGAGTCAA 174899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583247720376560